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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGGTTGTCTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGgtaatgagttggttagaagttagaactaagtgttgtaagaaccgaaaagcgaaaaacttattgaactctacctttgcttgctttgtttgttgtttgataaacag

Basic information

species Arabidopsis thaliana
transcript AT1G75220.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125265319|gb|EL279404.1|EL279404
EST:     TCTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAG                         ATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACT
genomic: TCTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGgtaatgagtt ... tgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACT
EST: gi|125203273|gb|EL218227.1|EL218227
EST:     TCTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAG                         ATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
genomic: TCTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGgtaatgagtt ... tgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
EST: gi|125315603|gb|EL329688.1|EL329688
EST:     TTATGTCTGAG                         ATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
genomic: TTATGTCTGAGgtaatgagtt ... tgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
EST: gi|86087762|gb|DR383521.1|DR383521
EST:     CTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAG                         ATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
genomic: CTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGgtaatgagtt ... tgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
EST: gi|164090885|gb|ES158488.1|ES158488
EST:     CTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAG                         ATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC
genomic: CTTTTTCTCATTGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGgtaatgagtt ... tgataaacagATCCTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCC