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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGTAGACGCAACTGCAGCTAAAGAACTCATGGGACTTTTGGTTAAGTTGCAATCTTCACTTCCCGAAGTCAACAAgtatctctctctccacttaatttcaaatccattcctttttacttgtatgactttcagactcacgtttttggataattggtcag

Basic information

species Arabidopsis thaliana
transcript AT1G70730.1
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125092927|gb|EL150709.1|EL150709
EST:     CACTTCCCGAAGTCAACAA                         GATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
genomic: CACTTCCCGAAGTCAACAAgtatctctct ... aattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
EST: gi|116415466|gb|EG458058.1|EG458058
EST:     CTCATGGGACTTTTGGTTAAGTTGCAATCTTCACTTCCCGAAGTCAACAA                         GATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
genomic: CTCATGGGACTTTTGGTTAAGTTGCAATCTTCACTTCCCGAAGTCAACAAgtatctctct ... aattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
EST: gi|86084572|gb|DR380331.1|DR380331
EST:     TCATGGGGACTTTTGGTTAAGTTGCAATCTTCACTTCCCGAAGTCAACAA                         GATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCSCAGATGA
genomic: TCAT-GGGACTTTTGGTTAAGTTGCAATCTTCACTTCCCGAAGTCAACAAgtatctctct ... aattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
EST: gi|124989916|gb|EL062197.1|EL062197
EST:     CAATCTTCACTTCCCGAAGTCAACAA                         GATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA
genomic: CAATCTTCACTTCCCGAAGTCAACAAgtatctctct ... aattggtcagGATTATAAAGGGAATTCATCCAGAGGTGGCAAATGTTGCAAGCGCAGATGA