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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATAGGTCAAGCCTATGAAGACATGCAGACACAGAACCAACATTTGTTGCAGCAGGTGGCTGAGCGGGACGATTATAATATCAAGgtaaattttagtgttaataggacactttgatactgagatttgttttttgttttttttttcatcttttctcaattccaatctttgactttaactatatctagcctttgaacacatcttttgtagatttctgatttgatctatgatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G55250.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55250.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA14G05490.1 (Glycine max), 5'ss of exon 5
ACTATAGGTCAAGCCTATGAAGACATGCAGACACAGAACCAACATTTGTTGCAGCAGGTGGCTGAGCGGGACGATTATAATATCAAGgtaaattttagtgttaataggacactttgatactgagatttgttttttgttttttttttcatcttttc-tcaattccaatctttgactttaactatat--ctagcctttgaacacatcttttgtagatttctgatttgatctatgatttcag
||||| |||||||| |||||||| |||||||||||||||||| || ||||| | ||||||   ||| |||| || |||||||| ||||||  | ||| | |||        ||||  ||   | | |   || || || | ||   ||||||| | |  | | || |  |   |||    ||| |  || || ||||                                          
ACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGAACCAGGTGATCGAGAGGGATGACTATAATATTAAGgtatgtcttacttttat-------ctttacta--aacactgccttgttattatcttcaccatctttccgtgcactacagtaat--gcttaggttattttcctggcttttgc-----------------------------------------

upper sequence: AT1G55250.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA02G43490.1 (Glycine max), 5'ss of exon 16
ACTATAGGTCAAGCCTATGAAGACATGCAGACACAGAACCAACATTTGTTGCAGCAGGTGGCTGAGCGGGACGATTATAATATCAAGgtaaattttagtgttaataggacactttgatactgagatttgttttttgttttttttttcatcttttctcaattccaatctttgactttaactatatctagcctttgaacacatcttttgtagatttctgatttgatctatgatttcag
||||| |||||||| |||||||| |||||||||||||||||| || ||||| | ||||||   ||| |||| || |||||||| ||||||  | ||| | |||          |  | ||||           ||||| |  | |||| | |||  | || |         |||  |   ||   ||| || |   |    ||||||                             
ACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATCGAGAGGGATGACTATAATATTAAGgtatgtcttacttttatct---tttctaaacactg---------ccttgttatgatcttcaccattttcccatgc---------actacagtaatgcttaggctattttccgggcttttgc----------------------------

upper sequence: AT1G55250.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv06s0004g00950.t01 (Vitis vinifera), 5'ss of exon 15
ACTATAGGTCAAGCCTATGAAGACATGCAGACACAGAACCAACATTTGTTGCAGCAGGTGGCTGAGCGGGACGATTATAATATCAAGgtaaattttagtgttaataggacactttgatactgagatttgttttttgttttttttttcatcttttctcaattccaatctttgactttaactatatctagcctttgaacacatcttttgtagatttctgatttgatctatgatttcag
||||| |||||||| |||||||| ||||||||||| ||||||||| || ||||||||||| ||||| |||| ||||| |||||||||||    | | |||| |         |||  | |   ||||  |   ||||| |  |||   |||||| |||||| | || || ||   |     || ||||  ||   |    | | |||| | | ||    |  |             
ACTATTGGTCAAGCATATGAAGATATGCAGACACAAAACCAACATCTGCTGCAGCAGGTGACTGAGAGGGATGATTACAATATCAAGgt---ctgtggtgtaa---------ttttctgcgttgattgctaaattgttatgatttctttcttttatcaatttccatgttggatgct-----tagctagttttgccatggttgtgttgttggtgtcatgctgcag------------