Sequence
atgc intronic sequence ATGC exonic sequenceCTAAAGAGAAATTTGAGTTTGAAAACATGATTGTTGGACAAGCAATTCCGTCGGGTTTTATTCCAGCAATTGAGAAAGGTTTCAAAGAAGCTGCAAACTCgtgagtgatcttcgtctctcaatttctcgttttcctcttgatttatttgaggaaatgttgttgtaagtgacagtgaaaccccctattccattgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G45332.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: LOC_Os03g36780.1 (Oryza sativa), 5'ss of exon 15
CTAAAGAGAAATTTGAGTTTGAAAACATGATTGTTGGACAAGCAATTCCGTCGGGTTTTATTCCAGCAATTGAGAAAGGTTTCAAAGAAGCTGCAAACTCgtgagtgatcttcgtctctcaatttctcgttttcctcttgatttatttgaggaaatgttgttgtaagtgacagtgaaaccccctattccattgcag
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CTGATGGTAAATTTGAGTTTGATAACATGATCATTGGACAAGCAATTCCTTCAAACTTCATACCAGCAATTGAGAAGGGTTTTAAGGAAGCTTGCAATTCgtgagt---ccatgtctccca-tcacgtgttaaaagtctattttgtttgcaga---gtgataacttgtgtttgtgtttccattctatgcactgcag
upper sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GRMZM2G056393_T02 (Zea mays), 5'ss of exon 15
CTAAAGAGAAATTTGAGTTTGAAAACATGATTGTTGGACAAGCAATTCCGTCGGGTTTTATTCCAGCAATTGAGAAAGGTTTCAAAGAAGCTGCAAACTCgtgagtgatcttcgtctctcaatttctcgttttcctcttgatttatttgaggaaatgttgttgtaagtgacagtgaaaccccctattccattgcag
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CTGATGGTAAATTCGAATTTGATAACATGATTATTGGACAAGCAATTCCTTCAAACTTTATACCAGCAATAGAGAAGGGTTTTAAGGAAGCTTGCAATTCgtgagtc-catgtattccttagttcttaaactgttttctcttttccct-------------cgcagataacatttattttcatttacatactgtag
upper sequence: AT1G45332.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA01G14800.1 (Glycine max), 5'ss of exon 10
CTAAAGAGAAATTTGAGTTTGAAAACATGATTGTTGGACAAGCAATTCCGTCGGGTTTTATTCCAGCAATTGAGAAAGGTTTCAAAGAAGCTGCAAACTCgtgagtga-----tcttcgtctctcaatttctcgttttcctcttgatttatttgaggaaatgttgttgtaagtgacagtgaaaccccctattccattgcag-------------------------------------------------------------------
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CATCAACTAAGTTTGCATTTGAAAACTTGCTTGTGGGTCAAGCTATTCCATCAAATTTTATCCCTGCAATTGAGAAAGGTTTCAAAGAAGCTGCCAACTCgtgagtaaaaaattaatcattgcttaatattttacttctaacttttgtcctctatcaatgtaatgatctagatttt--ttattttttttagtttat-acaatttggtcttgcttgtatgattaaacttatatttggtatgaaaaactcaatttctctcttccatacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19740618|gb|AU225971.1|AU225971EST: TCGGGTTTTATTCCAGCAATTGAGAAAGGTTTCAAAGAAGCTGCAAACTC GGGCTCACTAATTGGTCACCCTGTAGAAAATCTCAGAATAGTATTGACAGA
genomic: TCGGGTTTTATTCCAGCAATTGAGAAAGGTTTCAAAGAAGCTGCAAACTCgtgagtgatc ... tccattgcagGGGCTCACTAATTGGTCACCCTGTAGAAAATCTCAGAATAGTATTGACAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTAAAGAGAAATTTGAGTTTGAAAACATGATTGTTGGACAAGCAATTCCGTCGGGTTTTATTCCAGCAATTGAGAAAGGTTTCAAAGAAGCTGCAAACTCgtgagtgatcttcgtctctcaatttctcgttttcctcttgatttatttgaggaaatgttgttgtaagtgacagtgaaaccccctattccattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC