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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTGAAGAAATGCAAGCGGCGACTAAAGGCCTTGAAAAGGTTGAGCAAGAACTCATGGCTTCAGAAAATGATGGTGCAATTTCTTTGGGCTTCAGAAAGgtgagatacatgtgaaaatatgttcttagtttcctcatatgggcatcttgattaatctaaattggcaaatgataagaactacaaaatcttcgtagctgtttcaagtgagatcgtttatgttttcag

Basic information

species Arabidopsis thaliana
transcript AT1G31810.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA09G34830.1 (Glycine max), 5'ss of exon 15
GGCTGAAGAAATGCAAGCGGCGACTAAAGGCCTTGAAAAGGTTGAGCAAGAACTCATGGCTTCAGAAAATGATGGTGCAATTTCTTTGGGCTTCAGAAAGgtgagatacatgtgaaaatatgttcttagtttcctcatatg-ggcatcttgat-taatctaaattggcaaatgataagaactacaaaatcttcgtagctgtttcaagtgagatcgtttatgttttcag
|||||||||||||||||| | || ||||||  | || || |||||||||||||||   ||||| |||||||||||||| || |||   || ||  | |||||||||   |    |||||||   |||   || | |||||| |  ||  || | | ||||||  |        |  |||       ||| || ||  || ||  |                       
GGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTCGCTGCTTCTGAAAATGATGGTGCTATATCTACAGGATTTCGTAAGgtgagaagta---aaaaatattggctt---ttgcccatatgtgatatactgctcttatctaagatacttctctactagagggcatgaatgtttgtc-ctattcaaca---------------------

upper sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA04G14770.1 (Glycine max), 5'ss of exon 15
GGCTGAAGAAATGCAAGCGGCGACTAAAGGCCTTGAAAAGGTTGAGCAAGAACTCATGGCTTCAGAAAATGATGGTGCAATTTCTTTGGGCTTCAGAAAGgtgagatacatgtgaaaatatgttcttagtttcctcatatgggcatcttgattaatctaaattggcaaatgataagaactacaaaatcttcgtagctgtttcaagtgagatcgtttatgttttcag
|||||||||||||||||| | || ||||||  | || || ||||||||||||||    ||||| |||||||||||||| || |||   || ||  | |||||||||   |    ||||| |   |||   || | |||||| |       | |  ||| | ||   | |   |    |||| | ||  |   |   |||   |    | |                
GGCTGAAGAAATGCAAGCTGTGAGTAAAGGTTTAGAGAAAGTTGAGCAAGAACTTGCTGCTTCTGAAAATGATGGTGCTATATCTACTGGATTTCGTAAGgtgagaagta---aaaaatgttggctt---ttgcccatatgtgagat---actgctcttatttaagatact-tctctactagagaacatggatgtttgtcctattcaaca----------------

upper sequence: AT1G31810.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv02s0033g01360.t01 (Vitis vinifera), 5'ss of exon 15
GGCTGAAGAAATGCAAGCGGCGACTAAAGGCCTTGAAAAGGTTGAGCAAGAACTCATGGCTTCAGAAAATGATGGTGCAATTTCTTTGGGCTTCAGAAAGgtgagatacatgtgaaaatatgttcttagtttcctcatatgggcatcttgattaatctaaattggcaaatgataagaactacaaaatcttcgtagctgtttcaagtgagatcgtttatgttttcag
||| || ||||||||||| | || |||||| |||||||||||||||||||||||||  || || |  ||||||||||| || |||   ||||||  |||||||||    |  |   | ||  |  ||| ||  |   |||||         | |   |   || | |  |  |  |    |  |    ||  |   | |||   |||                   
GGCCGAGGAAATGCAAGCTGTGAGTAAAGGTCTTGAAAAGGTTGAGCAAGAACTCACTGCCTCGGTGAATGATGGTGCTATCTCTGCTGGCTTCCAAAAGgtgaggggtacataggattac-tgattaattcac---tatggaatctgctctcatgtttcttttggacttagtttgtgtaatcatcctttttt---tttttttggtg-------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86044355|gb|DR340110.1|DR340110
EST:     AACTCATGGCTTCAGAAWATGATGGTGCWATTTCTTTGGGCTTCAGAAAG                         GTCTTGAAGGAGTTTCTTGATATGGCTGATGAGGAAGTGAAGACGCTT
genomic: AACTCATGGCTTCAGAAAATGATGGTGCAATTTCTTTGGGCTTCAGAAAGgtgagataca ... atgttttcagGTCTTGAAGGAGTTTCTTGATATGGCTGATGAGGAAGTGAAGACGCTT