Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGGAGGAGATCTGACACCTGCAAGAGCGTTTACGTCACTCTCTCTATTTTCTGTGCTTCGCTTCCCTTTATTCATGCTTCCAAACATTATAACTCAGgtgatttccttaaaatgtttcttgaaccatgttttcatgtccagtactgaataatgtggcatcagtagtaatgattgcttctgattgctcttttaattttccatctctacctctttttctagaccagtcgttgtcataatgtttttgcagatgctgaccaggctttacttttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G30400.2
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30400.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA15G09900.1 (Glycine max), 5'ss of exon 15
GCTTGGAGGAGATCTGACACCTGCAAGAGCGTTTACGTCACTCTCTCTATTTTCTGTGCTTCGCTTCCCTTTATTCATGCTTCCAAACATTATAACTCAGgtgatttccttaaaatgtttcttgaaccatgttttcatgtccagtactg-aataatgtggcatcagtagtaatgattgcttctgattgctcttttaattttccatctctacctctttttctagaccagtcgttgtcataatgtt-tttgcagatgctgaccaggctttacttttgtag
||||||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||||||||| || ||| | ||||||||||| || | |||||||||||| | ||  |     |  ||    |      |||   | |    |  || |  |   || | |      |  |   | ||    | |    ||| | | || |||    | |  | |    |||      | ||    |||||  ||  |  || || |      |||  | ||  ||
GCTTGGAGGGGATCTGACACCTGCAAGAGCTTTTACATCACTTTCTCTGTTTTCTGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGgtaagttattc----tcctttgcaattttcttttgtttctttgattttgcagcaggatgccttatcctatgttttatactctctaataaaatttaattcttgcata---agcagtgtagtgagaattaatgctgcaccaatgtagttcacttatcctaattctttttttgtcttaaag

upper sequence: AT1G30400.2 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA13G29180.1 (Glycine max), 5'ss of exon 15
GCTTGGAGGAGATCTGACACCTGCAAGAGCGTTTACGTCACTCTCTCTATTTTCTGTGCTTCGCTTCCCTTTATTCATGCTTCCAAACATTATAACTCAGgtgatttccttaaaatgtttcttgaaccatgttttcatgtccagtactgaataatgtggcatcagtagtaatgattgcttctgattgctcttttaat-tttccatctctacctctttttctagaccagtcgttgtcataatgtttttgcagatgctgaccaggctttacttttgtag
||||||||| |||||||||||||||||||| ||||| ||||| ||||| ||||| |||||||| || ||| | ||||||||||| || | |||||||||||| |  |  ||        || |   | || || |  |||    |      | || | ||| |||     |||  | || ||   || | || || | | || || | ||   | |||                                                           
GCTTGGAGGGGATCTGACACCTGCAAGAGCATTTACATCACTTTCTCTGTTTTCCGTGCTTCGATTTCCTCTCTTCATGCTTCCTAATACTATAACTCAGgtcaggttatt-------ctcctttgcaattttcttttgtttctt------tgattttgcagcag----gatgccttctccta--tgtttttgtactctctctatttgtattccctttc----------------------------------------------------------