1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GTGCACCATTTAAGAAATTCGCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATACATCAGCCCAGgtttgttgcatgtttcttgtctttttttgacaaaccatctgttgtgtttcagattctaatccctttgcgggaatgttatcgacttgcag
species | Arabidopsis thaliana |
transcript | AT1G12000.1 |
intron # | 15 |
splice site | 5' |
intron type | U2 |
EST: CGCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATACATCAGCCCAG GTCCGATCCAATTCACTGGACCTGGTTCAGACTCTCTCAGCCACACTCTACEST: gi|86060419|gb|DR356176.1|DR356176
genomic: CGCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATACATCAGCCCAGgtttgttgca ... cgacttgcagGTCCGATCCAATTCACTGGACCTGGTTCAGACTCTCTCAGCCACACTCTAC
EST: GCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATAACATCAGCCCAG GTCCGATCCAATTCACCTGGACCTGGTTCAGACTCTCTCAGCCACACTCTAEST: gi|125190594|gb|EL205548.1|EL205548
genomic: GCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATA-CATCAGCCCAGgtttgttgca ... cgacttgcagGTCCGATCCAATTCAC-TGGACCTGGTTCAGACTCTCTCAGCCACACTCTA
EST: ATTGAAGAACCGATACATCAGCCCAG GTCCGATCCAATTCACTGGACCTGGTTCAGACTEST: gi|164209295|gb|ES164096.1|ES164096
genomic: ATTGAAGAACCGATACATCAGCCCAGgtttgttgca ... cgacttgcagGTCCGATCCAATTCACTGGACCTGGTTCAGACT
EST: ATTGAAGAACCGATACATCAGCCCAG GTCCGATCCAATTCACTGGACCTGGTTCAGACTCTACTCAGCCACACTCTA
genomic: ATTGAAGAACCGATACATCAGCCCAGgtttgttgca ... cgacttgcagGTCCGATCCAATTCACTGGACCTGGTTCAGACTCT-CTCAGCCACACTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCACCATTTAAGAAATTCGCATCACTGCGTGAAGAATGGGCATTGAAGAACCGATACATCAGCCCAGgtttgttgcatgtttcttgtctttttttgacaaaccatctgttgtgtttcagattctaatccctttgcgggaatgttatcgacttgcag
- - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAC