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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATAgtgagttttaaattccttatgtacaacggatagtgtaaagtgtttagatgcgttttggattggtagtaaatgtttaatttggtggggttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G08860.1
intron # 15
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA19G42790.1 (Glycine max), 5'ss of exon 15
ATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATAgtgagttttaaat--tccttatgtacaacggatagtg-taaagtgtttagatgcgttttgg---attggtagtaaatgtttaatttggtggggttgcag-----------------------------
 |||| |||||||||||||| || ||||| |||||||||||||||||  |||||||||| || || || |||||||| ||||||| |||  | || ||| |||   |  |  | || |  |  |   | | ||| |  | |   |       ||||||    |      |   |  | | ||   |    ||  ||                             
GTGCTGGATGCTGATAATGGGCGTCGGTTGGAGAGTTCTACTGGTCGTGTAGCTACACGAGATATGGTGCAATTTGTGCCTATGAGAGAAGTACAAAgtaagtaccagttgcttctcaaattaacttgcttgtgattcaattcgttagcctattttggcccctccaagttttgtactcatttcattccatttaaagttaaatgcaccctcatgtgtttttgacag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA03G40210.1 (Glycine max), 5'ss of exon 15
ATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATAgtgagttttaa--attccttatgtacaacggatagtgt---aaagtgt-----ttagatgcgttttggattggtagtaaatgtttaatttggtggggttgcag------------------------------
 |||| |||||||||||||| || | ||| |||||||||||||||||  |||||||| | || || || |||||||||||||||| |||  | || ||| |||   |     |  | | ||  |   | | || |   ||   ||     |||  ||     |  | |  | |||    ||| ||||  |    ||  |                               
GTGCTGGATGCTGATAATGGGCGTCAGTTGGAGAGTTCTACTGGTCGTGTAGCTACAAGAGATATGGTACAATTTGTCCCTATGAGAGAAGTACAAAgtaagtaccagttgctattcaagttaacttgtttgtctttcaattcgttagccttatctggcccctcaaatttttgtactcatttcatttcattccatttgaagttaaacgcaccctcctgtgtttttgacag

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: GLYMA03G40220.1 (Glycine max), 5'ss of exon 15
ATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATAgtgagttttaaattccttatgtacaacggatagtgtaaagtgtttagatgcgttt---tggattggtagtaaatgtttaatttggtggggttgcag------
 |||| |||||||||||||| || |||||||||||| | || |||||  | |||||||| || || || |||||| ||||||||| |||  | || ||| |||   ||      | ||| |  |   | |  |    ||||| |||    ||    |  ||  ||  || | ||  ||| |      || ||       
GTGCTGGATGCTGATAATGGGCGTCGGTTAGAGAGTCCCACCGGTCGCGTGGCTACACGAGATATAGTGCAATTTATCCCTATGAGAGAAGTACAGAgtaagtaccaatcagtctttgttcgtcttttcgaatct--tgtttggataaagttatacgtgttcttaagaacttttctattagaaaaactttcaaaaaaca

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 5'ss of exon 16
ATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATAgtgagttttaaattccttatgtacaacggatagtgtaaagtgtttaga----tgcgttttggattggtagtaaatgtttaatttggtggggttgcag-------
|| |||||||||||||| ||| | ||||||||||||||||| || ||  |||| || || || || || || ||||| || ||||  ||  | | | ||||||   | |||  | || ||    |   ||  ||  ||||| | |    || |||||    |   | |  |  | | |  |  |   |||  ||       
ATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTGgtgagtac-atatttttcat-tagcttgtccagcatag-gtgttgaaaaacttgagttttcagctcaaactcca-atctcacatcatcctgttagaggctaata

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 5'ss of exon 13
ATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATAgtgagttttaaattccttatgtacaacggatagtgtaaagtgtttaga---tgcgttttggattggtagtaaatgtttaatttggtggggttgcag-------
|| |||||||||||| ||||||| ||| ||||||||||||| || ||  | || || || || || || || ||||| || ||||  ||  | | | ||||||   | |||  | || ||    |   ||  ||   | |  | |   || |||||    |   | |  |  | | |  |  |   |||  ||       
ATCCTTGATGCTGATGATGGTCGTCGGCTAGAGAGTTCTACAGGACGTGTGGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTGgtgagtac-atatttttcat-tagcttgtccagcataggttttgaaaaacttgagttttcagctcaaacttca-atctcacatcatcctgttagaggctaata

upper sequence: AT1G08860.1 (Arabidopsis thaliana), 5'ss of exon 15
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 5'ss of exon 15
ATGCTTGATGCTGATAATGGTCGGCGGTTAGAGAGTTCTACTGGTCGAATAGCTACACGGGACATCGTTCAATTTGTCCCTATGAAAGACATCCATAgtgagttttaaattccttatgtacaacggatagtgtaaagtgtttaga---tgcgttttggattggtagtaaatgtttaatttggtggggttgcag-------
|| |||||||||||||| ||| | ||||||||||||||||| || ||  |||| || || || || || || ||||| || ||||  ||  | | | ||||||   | |||  | || ||    |   ||  ||   | |  | |   || |||||    |   | |  |  | | |  |  |   |||  ||       
ATCCTTGATGCTGATAACGGTTGTCGGTTAGAGAGTTCTACAGGACGTGTAGCAACTCGAGATATTGTACAGTTTGTTCCCATGAGGGAAGTGCGTGgtgagtac-atatttttcat-tagcttgtccagcataggttttgaaaaacttgagttttcagctcaaactcca-atctcacatcatcctgttagaggctaata