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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGgtaagtcatattatttctgatttatcccgttccataataagttcttcatttgaccagtactaaatcaaagagctgtaacatttggtaacatatgcatttttcgaatgtag

Basic information

species Arabidopsis thaliana
transcript AT5G53430.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G170412_T01 (Zea mays), 5'ss of exon 14
TGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGgtaagtcatattatttctgatttatcccgttccataataagttcttcatttgaccagtactaaatcaaagagctgtaacatttggtaacatatgcatttttcgaatgtag
||| || || |||||||||||||| ||||| ||||| || | || ||||||||| || || |||||||| ||||| ||  | || || ||| |||||||||||      || |   ||||   ||  | ||  ||  | | ||     ||| |  |  |  | |        || |  | ||| ||  || ||   ||||  | |||   
TGTGATTTGTAAGCAAATACATGGTTCATGTACTCAATGCTACAGGTGCTCTACTTACTACCATGCCATTTGTGCATCAAGGGCAGGCTATCGAATGGAGgta-----catcagcactgaacgataacttt--atgctgatttaaatgtttaataataataataatggtttcctttttctttttgtctcacat---ttttatgtatggtt

upper sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA04G41500.1 (Glycine max), 5'ss of exon 15
TGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGgtaagtcat-attatttctgatttatcccgttccataataagt--tcttcatttgaccagtactaaatcaaagagctgtaacatttggtaacatatgcatttttcgaatgtag
||| || ||||||||||| ||||| || || || || ||||||||||| ||||| ||||  |||||||||||||||||  | ||||| ||| |||||||||| ||   | | |     | |  |  |  | |  |||    ||  | || | ||  |   || |   | ||  |  | |||       |  || ||  | ||           
TGTTATTTGCAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCTGGTTATCGAATGGAGgtgaggggtcactcagattaaagtggcttgcttgatatcttgtgattttaaattttcttttaatt--ttaagcaagtttaatggcaattttca-atttacttc----------

upper sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA06G13330.1 (Glycine max), 5'ss of exon 15
TGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGgtaagtcatattatttctgatttatcccgttccataataagttcttcatttgaccagtactaaatcaaagagctgtaacatttggtaaca-tatgcatttttcgaatgtag
||| || || |||||||| ||||| || || || || ||||||||||| ||||| ||||  |||||||||||||||||  | || || ||| |||||||||| ||     ||   || |||| |    | |   |    |  |  | ||||||  | | ||   |  ||        |  |||  |  || | | || ||| |        
TGTTATTTGTAAGCAAATTCATGGTTCGTGTACACAATGTTGCAAGTGTTCTACTTATTTCCATGCCATGTGTGCTTCAAGGGCCGGTTATCGAATGGAGgtgaga---gttcactcagattaaattggcttgcttgatatcttgtgatttgaaaatttct---tttaattttaagcaagtttaatggcaattttcaatttacttc-----

upper sequence: AT5G53430.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 5'ss of exon 15
TGTAATATGCAAGCAAATACATGGCTCATGCACTCAGTGTTGCAAGTGCTCTACGTATTATCATGCCATGTGTGCTTCCCGAGCTGGGTATAGAATGGAGgtaagtcatattatttctgatttatcccgttccataataagttcttcatttgaccagtactaaatcaaagagctgtaacatttggtaacatatgcatttttcgaatgtag-
 ||||| || |||||||||||||| |||||||| |||||||||||||| ||||| || || ||||| |||||||| ||  | || |||||| | |||||||| ||     | ||| ||| | |||    |   |||| |  || ||  ||| |       ||  | |||||| |    ||| |   ||   |    | | | ||||  || 
CGTAATCTGTAAGCAAATACATGGTTCATGCACACAGTGTTGCAAGTGTTCTACTTACTACCATGCAATGTGTGCATCAAGGGCGGGGTATCGTATGGAGgtgagatgc-tcattgctg-tctatt---tgtaataaca--tttttggtttaaagtactgtagtttaaagag-tacttcatctcaaaaagaa---gtgtcttgaattcaga