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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGAAGAGTTGCAGAGGAGCTCATCTTTGGCTTGGACCATATTACCACTGGAGCGAGTAGCGATCTGTCACAGGCCACTGAACTTGCACAATACATGgtaacctcatgtacatgtgcttaattgcttctttttttctggtttatcaaaagagttagcctttggttcttttagttttctggaatgaggtttgagggacttagtctctgagatccttaaggtgaacttacaagttaatgcgagaagatggatcttacctcttgttgtagttgtagtaatgcttttctttttaatggaag

Basic information

species Arabidopsis thaliana
transcript AT5G53170.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G53170.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA13G08160.1 (Glycine max), 5'ss of exon 14
GGGAGGAAGAGTTGCAGAGGAGCTCATCTTTGGCTTGGACCATATTACCACTGGAGCGAGTAGCGATCTGTCACAG-GCCACTGAACTTGCACAATACATGgtaacctcatgtacatgtgcttaattgcttctttttttctggtttatcaaaagagttagcctttggttcttttagttttctggaatgaggtttgagggacttagtctctgagatccttaaggtgaacttacaagttaatgcgagaagatggatcttacctcttgttgtagttgtagtaatgcttttctttttaatggaag
|||||||||||||||||||||||| |||||||||  |||  || | || |||||||| ||||| |||||  ||||  || ||||| ||||| |||||||||||||  |  ||  |     ||  ||||  || | |    |  |  |||     |  |||   |   || | |||         ||| | | |||    |  |  |||                                                                                             
GGGAGGAAGAGTTGCAGAGGAGCTTATCTTTGGCCAGGATTATGTCACAACTGGAGCAAGTAGTGATCT-CCACACTGCTACTGAGCTTGCCCAATACATGgtaattttctgctcc----ctgtattgtgtcatgtgcagtcttgcatctgctaaactagagatcacttttattaa------aaaattatgcttgtataatattttcttgc------------------------------------------------------------------------------------------

upper sequence: AT5G53170.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA14G29810.1 (Glycine max), 5'ss of exon 6
GGGAGGAAGAGTTGCAGAGGAGCTCATCTTTGGCTTGGACCATATTACCACTGGAGCGAGTAGCGATCTGTCACAG-GCCACTGAACTTGCACAATACATGgtaacctcatgtacatgtgcttaattgcttctttttttctggtttatcaaaagagttagcctttggttcttttagttttctggaatgaggtttgagggacttagtctctgagatccttaaggtgaacttacaagttaatgcgagaagatggatcttacctcttgttgtagttgtagtaatgcttttctttttaatggaag
|||||||||||||||||| ||||| |||||||||  |||  || | || |||||||| ||||| |||||  ||||  || ||||| ||||| |||||||||||||  |  ||  |   ||    ||||  ||   |    |  |  |||     |  |||       || | | |         ||| | | |||    | ||      |                                                                                           
GGGAGGAAGAGTTGCAGAAGAGCTTATCTTTGGCCAGGATTATGTCACAACTGGAGCAAGTAGTGATCT-CCACACTGCTACTGAGCTTGCCCAATACATGgtaattttctgctcccctgt---attgtgtcaagtgcagtcttgcatctgctaaactagagaccacttttataaa------aaaattatgcttgtataatttttctgtt-------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86078650|gb|DR374407.1|DR374407
EST:     GAGCGAGTAGCGATCTGTCACAGGCCACTGAACTTGCACAATACATG                         GTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAGAA
genomic: GAGCGAGTAGCGATCTGTCACAGGCCACTGAACTTGCACAATACATGgtaacctcat ... ttaatggaagGTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAGAA
EST: gi|116396094|gb|EG438686.1|EG438686
EST:     CTGGAGCGAGTAGCGATCTGCCACAGGCCACTGAACTTGCACAATACATG                         GTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAGAA
genomic: CTGGAGCGAGTAGCGATCTGTCACAGGCCACTGAACTTGCACAATACATGgtaacctcat ... ttaatggaagGTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAGAA
EST: gi|116462972|gb|EG505564.1|EG505564
EST:     CTGGAGCGAGTAGCGATCTGTCACAGGCCACTGAACTTGCACAATACATG                         GTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAGAA
genomic: CTGGAGCGAGTAGCGATCTGTCACAGGCCACTGAACTTGCACAATACATGgtaacctcat ... ttaatggaagGTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAGAA
EST: gi|86036171|gb|DR331924.1|DR331924
EST:     CTGGAGCGAGTAGCRTTCTGTCACAGGCCACTGAACTTGCACAATACATG                         GTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAGAA
genomic: CTGGAGCGAGTAGCGATCTGTCACAGGCCACTGAACTTGCACAATACATGgtaacctcat ... ttaatggaagGTATCGAGTTGTGGGATGAGTGAGGCAATAGGACCAGTTCATATAAAAGAA