1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
AATCCTAAGGGAAGAGATGTAGAAGACGGTGATGAATTTGAATTTAATGATGAGTTTGCAGCTCCGCTGTATCGCATTAAGgtacgttggtttttttcttggtctcttcacttaaagtatcctagaatcttgtgatactgttttgtatgtagcttatagtgaagcaattctttcttttgttcctgggtgcag
species | Arabidopsis thaliana |
transcript | AT5G46210.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CTCCGCTGTATCGCATTAAG GTAAATGCGATCCAGATGAAAGAGACAGTAGAGGAGAACACAAGTAACAAAEST: gi|86083104|gb|DR378863.1|DR378863
genomic: CTCCGCTGTATCGCATTAAGgtacgttggt ... ctgggtgcagGTAAATGCGATCCAGATGAAAGAGACAGTAGAGGAGAACACAAGTA-CAA-
EST: ATGAATTTGAATTTAATGATGAGTTTGC--STCCGCTGTATCGCATTAAG GTAAATGCGATCCAGATGAAAGAGACAGTAGAGGAGAACACAAGTACAACGEST: gi|124746921|gb|EH837217.1|EH837217
genomic: ATGAATTTGAATTTAATGATGAGTTTGCAGCTCCGCTGTATCGCATTAAGgtacgttggt ... ctgggtgcagGTAAATGCGATCCAGATGAAAGAGACAGTAGAGGAGAACACAAGTACAACG
EST: ATGAATTTGAATTTAATGATGAGTTTGCAGCTCCGCTGTATCGCATTAAG GTAAATGCGATCCAGATGAAAGAGACAGTAGAGGAGAACACAAG
genomic: ATGAATTTGAATTTAATGATGAGTTTGCAGCTCCGCTGTATCGCATTAAGgtacgttggt ... ctgggtgcagGTAAATGCGATCCAGATGAAAGAGACAGTAGAGGAGAACACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATCCTAAGGGAAGAGATGTAGAAGACGGTGATGAATTTGAATTTAATGATGAGTTTGCAGCTCCGCTGTATCGCATTAAGgtacgttggtttttttcttggtctcttcacttaaagtatcctagaatcttgtgatactgttttgtatgtagcttatagtgaagcaattctttcttttgttcctgggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC