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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCATTTTTAGTAATGAGgtgtggcttttactggctttttatttagtatagatacacattgctgggtttaacttccatggctacttaatctgttgcatgacgttgtataaaatatcca...

Basic information

species Arabidopsis thaliana
transcript AT5G22750.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G22750.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA12G30540.1 (Glycine max), 5'ss of exon 15
AATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCATTTTTAGTAATGAGgtgtggc-ttttactggct---ttttatttagtatagatacacattgctgggtttaacttccatggctacttaatctgttgcatgacgttgtataaaatatcca---
| |||||||| |||||    ||||||||||| |||||||| ||  ||||  | ||||| |||||||| |||||||||||||| |||||| | |||||||||| ||   | ||||   |    |||   ||||||||  |  |  |||        || ||| |  || |    | |||  |||  |  || |   || | |      
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtcttacattcccggtttctgttagtatacttgaattttgt---accaaaattctactgccagc--acctga-gcacaa-attattctaattgtaagctt

upper sequence: AT5G22750.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA17G05390.1 (Glycine max), 5'ss of exon 14
AATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCATTTTTAGTAATGAGgtgtggcttttactggctttttatttagtatagatacac---attgctgggtttaacttccatggctacttaatctgttgcatgacgttgtataaaatatcca
| |||||||| |||||    ||||||||||| |||||||| ||  ||||  | ||||| |||||||| |||||||||||||| |||||| | |||||||||| ||   | |  |   ||   | ||  | |  ||| ||   | |  ||     || |||    || |    ||      | |   ||  |   ||  |||  
AGTTTGTTGAGCAAGGGCGTGTTCTTCATAATTATGCTTCAATATTGGAGTTACTTTTACGTCTTCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGgtatgatgtct--tacattcccaattcctgttaatatacttgaattttgtaccaaaattctgctgccagcacatg-acaacttattgtaattgtaagcatctt

upper sequence: AT5G22750.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 5'ss of exon 14
AATTTGTTGAACAAGGCAAAGTTCTTCATAACTATGCTTCGATCCTGGAACTGCTTTTGCGTCTTCGACAATGTTGTGATCACCCATTTTTAGTAATGAGgtgtggcttttactggctttttatttagtatagataca--cattgctgggtttaacttccatggctacttaatctgttgc--atgacgttgtataaaatatcca
|||||||||| |||||    ||||||||||| |||||||| ||  ||||  |||||||  ||||||| |||||||||||||| |||||| | || ||||||| || || ||||| |  |||  |  | ||  |||  |  |||  |   ||  |       |||  | | |  ||||||   || ||  ||       |     
AATTTGTTGAGCAAGGACGGGTTCTTCATAATTATGCTTCTATTTTGGAGTTGCTTTTATGTCTTCGCCAATGTTGTGATCATCCATTTCTTGTGATGAGgtttgtctcttacttgggtttgctccattagtgatggattcatgccctagtgcagtggtgctggtga-tgatgctgttgataataacaatgatggtggtgc---