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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATGgtaagttgtgtgtctatgaattgccgttgcatctttctgttgcctagttattttattgaaccatgtattcacctgtcttcctgttctcttag

Basic information

species Arabidopsis thaliana
transcript AT5G19690.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 14
GCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATGgtaagttgtgtgtctatgaattgccgttgcatctttctgttgcctagttattttattgaaccatgtattcacctgtcttcctgttctcttag
|| |||||||| || ||||||||||| ||||| |||||||| ||||| ||||| | ||| ||||||||||||||||| ||||||||     |      | |  |   || | |  |  ||     |  ||||||||||||       || |  |||  |  | |         
GCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGGTACTTTATATTGTTACGTCGGTATACTTTTCTGGAGTCATGgtaagaataataatggagga--ggtttttcttactattgcatttttattattttattgaggacataatcctgctgaatatcag---------

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 14
GCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATGgtaagttgtgtgtctatgaattgccgttgcatctttctgttgcctagttattttattgaaccatgtattcacctgtcttcctgttctcttag
|| |||||||| || ||||||||||| ||||| |||||| | ||||| ||||| | ||| ||||||||||||||||| ||||||||     |    ||| | |    |   |   ||   ||   |  ||||||||||||       ||    |||  |  | |         
GCATGCTTTTCTCCCCTATCTGATGCAAGCTCCTTTGTGATACTTTATATTGTTACGTCAGTATACTTTTCTGGAGTCATGgtaaga---ataataatggagttttttcttactattgcatt--tttattattttattgaggacataatcttgctgaatatcag---------

upper sequence: AT5G19690.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 14
GCGTGCTTTTCGCCTCTATCTGATGCCAGCTCTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATGgtaagttgtgtgtc-tatgaattgccgttgcatctttctgttgcctagttattttattgaaccatgtattcacctgtcttc--ctgttctcttag
|| ||||||| ||| ||||||||||| ||||| ||||| || |||||||| || |  |||||||| ||||||||||| ||||| ||  |  |||   | |||         ||| ||||     | |  |  ||||||    |  |||   ||  ||| ||   || || |   ||
GCATGCTTTTTGCCACTATCTGATGCAAGCTCCTTTGTTGTTCTTTACATAGTGACATCTGTATATTTTTCTGGAGTCATGgtgaggagattgttacaagaacaa-----acatttttcctcgtctttctgcttttatcattctttgt-cacaattgttttgaactattattacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124905316|gb|EH979396.1|EH979396
EST:     CTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATG                         GTTCGTCTTATGCTCGTGCTTGCTCCAGCAGCATGCATCATGT
genomic: CTTTTGTGGTCCTTTACATTGTAATGTCTGTATACTTTTCTGGAGTTATGgtaagttgtg ... gttctcttagGTTCGTCTTATGCTCGTGCTTGCTCCAGCAGCATGCATCATGT