Sequence
atgc intronic sequence ATGC exonic sequenceTTAGTGGCACCTGAGAGTCATTTACTTGTTTCCAGCTCTCTTGACAAAACTTTACGGATCTGGGACTTAAGGAAgtgagcaaaaacaatcattacggtttttccttttcttgtaagtttttgttcttgttccctacatgtggtttattatctttctggtaaaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G18525.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G18525.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA20G28920.1 (Glycine max), 5'ss of exon 8
TTAGTGGCACCTGAGAGTCATTTACTTGTTTCCAGCTCTCTTGACAAAACTTTACGGATCTGGGACTTAAGGAAgtgagcaaaaacaatcattacggtttttccttttcttgtaagtttttgttcttgttccctacatgtggtttattatctttctggtaaaacag----------
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TTGGCAGCACCTGAGGAACATCTACTTGTTTCCAGCTCTCTGGACAGAACTTTACGAGTCTGGGACTTAAGAATgtaag-agctatcaccctcatgaatgttgattcattaggagttttggaccatttagaactgtctatcttaagctttcttt-taataagaggtcaaagttttg
upper sequence: AT5G18525.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA10G38860.1 (Glycine max), 5'ss of exon 7
TTAGTGGCACCTGAGAGTCATTTACTTGTTTCCAGCTCTCTTGACAAAACTTTACGGATCTGGGACTTAAGGAAgtgagcaaaaacaatcattacggtttttccttttcttgtaagtttttgttcttgttccctacatgtggtttattatcttt--ctggtaaaacag--------
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TTGGCAGCACCTGAGGAACATCTGCTTGTTTCCAGCTCTTTGGACAGAACTTTACGAGTCTGGGACTTAAGAATgtaag-agctatcaccttcatgaactt-caattcattagagttttggaccatttagaactgtctctcttaagctttcttttattaagagatcaaaggcttgtMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116382644|gb|EG425236.1|EG425236EST: CTTGTTTCCAGCTCTCTTGACAAAACTTTACGGATCTGGGACTTAAGGAA GAGCTGGACACCACAGCCTTTTGTTGTCAAAGGACACAATGACGGTGTTTC
genomic: CTTGTTTCCAGCTCTCTTGACAAAACTTTACGGATCTGGGACTTAAGGAAgtgagcaaaa ... ggtaaaacagGAGCTGGACACCACAGCCTTTTGTTGTCAAAGGACACAATGACGGTGTTTC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTAGTGGCACCTGAGAGTCATTTACTTGTTTCCAGCTCTCTTGACAAAACTTTACGGATCTGGGACTTAAGGAAgtgagcaaaaacaatcattacggtttttccttttcttgtaagtttttgttcttgttccctacatgtggtttattatctttctggtaaaacag
- - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA