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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGATGTAGGGTTGTCAGAGCAGATTGATATTAGTATTGAAACAGAGAAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaactaatctttatctaggcttagctgttacaattatatcattgacttgtctctttgtttctgatcactgattcag

Basic information

species Arabidopsis thaliana
transcript AT5G13940.1
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116480284|gb|EG522876.1|EG522876
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481915|gb|EG524507.1|EG524507
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481924|gb|EG524516.1|EG524516
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116480243|gb|EG522835.1|EG522835
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481923|gb|EG524515.1|EG524515
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116480191|gb|EG522783.1|EG522783
EST:     AAGGATAGTTTATACATCGAAAGAATCCACATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481912|gb|EG524504.1|EG524504
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481910|gb|EG524502.1|EG524502
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481921|gb|EG524513.1|EG524513
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116480267|gb|EG522859.1|EG522859
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481918|gb|EG524510.1|EG524510
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGTAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481916|gb|EG524508.1|EG524508
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116480218|gb|EG522810.1|EG522810
EST:     AAGGATAGTTTATACATCGAAAGAATCCACATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116481922|gb|EG524514.1|EG524514
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
EST: gi|116480168|gb|EG522760.1|EG522760
EST:     AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAG                         TCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG
genomic: AAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaact ... actgattcagTCTCTCCAACTTGATGAAAAAGATAACCATCCAAGAGCCAACCTTTGAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAATGATGTAGGGTTGTCAGAGCAGATTGATATTAGTATTGAAACAGAGAAGGATAGTTTATACATCGAAAGAATCCGCATAGAGAAGCTCAAGCTCAGgttctcaactaatctttatctaggcttagctgttacaattatatcattgacttgtctctttgtttctgatcactgattcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA