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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACATAAAGCAGTATCCAGAGGCTTACACATACAACGGGATTGTGATAGTTCGAATCGATTCTCCTATTTACTTTGCCAACATAAGTTACATCAAGGACAGgtgagaaaggcgtttattcttccttgtggtatgaatctattagaaacattaacaagctggctttttttgcaaagtgcag

Basic information

species Arabidopsis thaliana
transcript AT5G13550.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G13550.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os09g06499.1 (Oryza sativa), 5'ss of exon 15
ACATAAAGCAGTATCCAGAGGCTTACACATACAACGGGATTGTGATAGTTCGAATCGATTCTCCTATTTACTTTGCCAACATAAGTTACATCAAGGACAGgtgagaaaggcgtttattcttcc-------ttgtggtatgaatctattagaa-acattaacaagctggct--ttttttgcaaagtgcag----------
| | |  ||| || || |||||||| || ||||||||||| ||  | |||||||| ||| | ||||| ||||||||||||||||||||||| || ||||||||   |     |||||   |         ||||| ||| ||| | ||     ||  | |    |||     | |||||   | ||             
ATAGATTGCAATACCCTGAGGCTTATACCTACAACGGGATAGTTGTTGTTCGAATTGATGCACCTATCTACTTTGCCAACATAAGTTACATAAAAGACAGgtggatattttttttatctgtatgaacagtttgtgttatcaattttttttcttaccctgatgtcctgatggatgttttgttgattgtgtcccttatcag

upper sequence: AT5G13550.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA18G52270.1 (Glycine max), 5'ss of exon 14
ACATAAAGCAGTATCCAGAGGCTTACACATACAACGGGATTGTGATAGTTCGAATCGATTCTCCTATTTACTTTGCCAACATAAGTTACATCAAGGACAGgtga-gaaaggcgtttattcttccttgtggtatgaatctattagaaacattaa--caagctggctttttttgcaaagtgcag
   | || |||||||| || || || |||||||| || ||||| || |||||  | ||| |||| ||||| ||||| |||| |||||||||||||||||||| | || | | |  |  |  |     |  |   |||| |       | ||||  ||    |  || | ||   | |     
-TGTTAAACAGTATCCTGAAGCATATACATACAATGGAATTGTAATCGTTCGTGTTGATGCTCCAATTTATTTTGCAAACACAAGTTACATCAAGGACAGGtaatgagaagtgagttgtaattgacattttcccaatcaagagcgtgccttaattcatttagagttctcttatcagg-----