Sequence
atgc intronic sequence ATGC exonic sequenceCTTTGGATTGGAAACTGATGTGGATGCTGTGAATTATCTCATGCTGGTTAATGATATGATTCATGGGCTCTACCCTGAAGCGATTACCGTTGGTGAAGATgtaagttttctgattggctaaataaaaaagtgctctacagaaccataagggatacatattgtgtatcatattaaagatagtccaaaaccaaattagtgtgaactgacaagagaaagttagtatatattttttggtgatctatgctaataaaatcgtttcatttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT5G03650.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA03G35020.1 (Glycine max), 5'ss of exon 14
CTTTGGATTGGAAACTGATGTGGATGCTGTGAATTATCTCATGCTGGTTAATGATATGATTCATGGGCTCTACCCTGAAGCGATTACCGTTGGTGAAGATgtaagttttctgattggctaaataaaaaagtgctctacagaaccataagggatacatattgtgtatcatattaaagatagtccaaaaccaaattagtgtgaactgacaagagaaagttagtatatattttttggtgatctatgctaataaaatcgtttcatttcag-
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TTTTGGTTTTGCAACTGATGTTGATGCTGTGATTTACCTGATGCTGACTAATGATGTCATTCATGGGCTGTTCCCTGAGGCTGTTACAATTGGTGAAGATgtatgttgtcctcttaaagttttgaattaatgtacttctgt-taacattttattcaaactgttt-taggagttgagtgaacaaaaagacaatatgatg---attgaaccctctatttgactgtatgaaaactggtagttgacaattcaattttctttccatttccag
upper sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA19G37750.2 (Glycine max), 5'ss of exon 14
CTTTGGATTGGAAACTGATGTGGATGCTGTGAATTATCTCATGCTGGTTAATGATATGATTCATGGGCTCTACCCTGAAGCGATTACCGTTGGTGAAGATgtaagttttctgattggctaaataaaaaagtgctctacagaaccataagggatacatattg--tgtatcatattaaagatagtccaaaaccaaattagtgtgaactgacaagagaaagttagtatatattttttggtgatctatgctaataaaatcgtttcatttcag
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TTTTGGTTTTGCAACTGATGTTGATGCTGTGGTTTACCTGATGCTGACTAATGATGTCATTCATGGGCTCTTCCCTGAGGCTGTTACAATTGGTGAAGATgtatgttgtctcttaaagttttgaattaa------tgtaattctgttaacattttattctaactgttttagtttagtagttgtcatgtctcaaattttagttgact--------------------------------------------------------------
upper sequence: AT5G03650.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv08s0007g03750.t01 (Vitis vinifera), 5'ss of exon 14
CTTTGGATTGGAAACTGATGTGGATGCTGTGAATTATCTCATGCTGGTTAATGATATGATTCATGGGCTCTACCCTGAAGCGATTACCGTTGGTGAAGATgtaagttttctgattggctaaataaaaaagtgctctacagaaccataagggatacatattgtgtatcatattaaagatagtccaaaaccaaattagtgtgaactgacaagagaaagttagtatatattttttggtgatctatgctaataaaatcgtttcatttcag
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TTTTGGATATGCTACCGATGTAGATGCCATGGTTTATCTAATGCTCGTTAATGATCTTATTCATGGGCTCTTCCCTGAGGCTGTTACTATTGGTGAAGATgtacgtatt---gttcaaagcacctgaaacttgtctttggctccttgatttttcaagaccttgcacatctctctacagaatctagaatctcat-gttaggatcc--------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125079419|gb|EL141433.1|EL141433EST: GATTCATGGGCTCTACCCTGAAGCGATTACCGTTGGTGAAGAT GTTAGTGGTATGCCAACATTCTGTATTCCTGTCCAAGATGGTGGCGTTGGA
genomic: GATTCATGGGCTCTACCCTGAAGCGATTACCGTTGGTGAAGATgtaagttttc ... ttcatttcagGTTAGTGGTATGCCAACATTCTGTATTCCTGTCCAAGATGGTGGCGTTGGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTTTGGATTGGAAACTGATGTGGATGCTGTGAATTATCTCATGCTGGTTAATGATATGATTCATGGGCTCTACCCTGAAGCGATTACCGTTGGTGAAGATgtaagttttctgattggctaaataaaaaagtgctctacagaaccataagggatacatattgtgtatcatattaaagatagtccaaaaccaaattagtgtgaactgacaagagaaagttagtatatattttttggtgatctatgctaataaaatcgtttcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA