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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCCATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAAgtaagactttatttcttgtccattaccagcattgcagaaaagctttgtttatgtaagttttacttgtcaacttttttagcctgagcttaacttgttattatgtttttgtgatttcag

Basic information

species Arabidopsis thaliana
transcript AT4G38510.5
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124824155|gb|EH909021.1|EH909021
EST:     CTCGCAGGGACCACTCTGATGTTTCTAATCAA                         TTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGT
genomic: CTCGCAGGGACCACTCTGATGTTTCTAATCAAgtaagacttt ... gtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGT
EST: gi|125318034|gb|EL332119.1|EL332119
EST:     TGTTTCTAATCAA                         TTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTG
genomic: TGTTTCTAATCAAgtaagacttt ... gtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTG
EST: gi|164031420|gb|EL996362.1|EL996362
EST:     CCATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAA                         TTGTATGCCAATTACGCTATT
genomic: CCATTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAAgtaagacttt ... gtgatttcagTTGTATGCCAATTACGCTATT
EST: gi|124772760|gb|EH862889.1|EH862889
EST:     TTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAA                         TTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTG
genomic: TTGGTGAGGGTATGACTCGCAGGGACCACTCTGATGTTTCTAATCAAgtaagacttt ... gtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGTG
EST: gi|125166086|gb|EL192050.1|EL192050
EST:     ACCACTCTGATGTTTCTAATCAA                         TTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGT
genomic: ACCACTCTGATGTTTCTAATCAAgtaagacttt ... gtgatttcagTTGTATGCCAATTACGCTATTGGAAAGGACGTGCAGGCCATGAAAGCCGT