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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACATgttagtacccgattatgctatcctatatatcatagttttacaagtctgtttttgtaatgctgttaaattgacctatgttcgctgcatatgacttctgctt...

Basic information

species Arabidopsis thaliana
transcript AT4G38240.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G38240.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os02g58590.1 (Oryza sativa), 5'ss of exon 14
TTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACATgttagtacccgattatgctatcctata---tatcatagttttacaagtctgtttttgtaatgctgttaaattgacctatgttc-----gctgcatatgacttctgctt-------------------------------
||| |||||||| ||| |||| ||||| ||    || | || ||| ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||  ||   | | |     |    | |   || || | || | ||     ||         | |  ||| ||   || ||  |       |    |||||||    ||                               
TTATTGGGATGACTGGGTGAGGCTAAAAGAGGTACACAGAGACCGGCAATTTATTCGCCCGGAAGTCTGCAGAACATACAATTTTGGCGAACATgtatgttggctacttcatcaatgcaaaaattaccacatttctgcacactagtagccactg-gatagtaatttagtctttgagccagtaagtatggatgacttgaatttacactaatagattttcatacctccttttcag

upper sequence: AT4G38240.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G426275_T01 (Zea mays), 5'ss of exon 14
TTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACATgttagtacccgattatgctatcctatatatcatagttttacaagt--ctgtttttgt---aatgctgttaaattgacctatgttcgctgcatatgacttctgctt
||| |||||||||||| |||| ||||||||    |||  |   || |||||||| || |||||| | ||||||||||||||||||||  | |||||  ||  |   |  | ||    | |  || | | |  |   |||  || |     |   ||| |   | |  || || |  ||  || |||   |         
TTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCATgtatgttgctattcttcctcattttttaattaaaatactggcagttgctatagcaatatgaataccagtcatctgtcccaaattt-cttcatgcaataaag----

upper sequence: AT4G38240.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G426275_T05 (Zea mays), 5'ss of exon 13
------TTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACATgttagtacccgattatgctatcctatatatcatagttttacaagt--ctgtttttgta---atgctgttaaattgacctatgttcgctgcatatgacttctgctt
      ||| |||||||||||| |||| ||||||||    |||  |   || |||||||| || |||||| | ||||||||||||||||||||  | |||||  ||  |   |  | ||    | |  || | | |  |   |||  || |     ||   || |   | |  || || |  ||  || |||   |         
TTTTACTTATTGGGATGATTGGGTGAGGCTAAAGGAGGTACATGGACATCGGCAATTCATACGCCCGGAAATTTGTAGAACATACAATTTTGGCAAGCATgtatgttgctattcttcctcattttttaattaaaatactggcagttgctatagcaatatgaataccagtcatctgtcccaaattt-cttcatgcaataaag----

upper sequence: AT4G38240.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA04G00200.1 (Glycine max), 5'ss of exon 14
TTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACATgttagtacccgattatgctatcctatatatcatagttttacaagtctgtttttgtaatgctgttaaattgacctatgtt-cgctgcatatgacttctgctt---
|||||||||||| ||| ||||||| || || || |||||||| || || || || || || ||||| || |||||||| ||||||||||| ||||| |||    | | ||  ||  |   | ||     ||||| |   |||  ||    || ||||  ||    |  | | |  |   |  || | |          
TTACTGGGATGACTGGTTGAGACTTAAAGAGAATCATAAAGGACGACAGTTTATCCGGCCCGAAGTATGCAGAACATATAATTTTGGTGAGCATgtaagt--ttgctaattgtactcagaagattgaccttttatatcgctgagttat--attctgtagaaccttcgcaggctatgaacctcataattagaagaatat

upper sequence: AT4G38240.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: EFJ19102 (Selaginella moellendorffii), 5'ss of exon 12
------TTACTGGGATGATTGGCTGAGACTAAAGGAAAACCATAAAGGCCGCCAATTCATTCGACCGGAAGTCTGTAGAACATACAATTTTGGTGAACATgttagtacccgattatgctatcctatatatcatagttttacaagtctgtttttgtaatgctgttaaattgacctatgttcgctgcatatgacttctgctt
       ||||||||||||||||| || || || ||||  | |||||| || |||||||||||||||||||||||| | || ||||| ||||| || ||||| ||| |     | |  |      |  | || |   || || |                                                        
AAAGGCGTACTGGGATGATTGGCTAAGGCTCAATGAAACTCGTAAAGGACGACAATTCATTCGACCGGAAGTCTGTCGGACGTACAACTTTGGAGAGCATgtaagttcttttgtttcattcttcgtgaaccaaatactttcatgcag-----------------------------------------------------