Sequence
atgc intronic sequence ATGC exonic sequenceGCTGAATCAAAGTTTGGCTATCTTCTGGAGGCTCTTGACATGGGTGCTCCTCCTCATGgtatgtaaatatttcttaaggtcaaaaaatctgagacttaagaatagattaatacaacatcgttacgtatatgcttaagagtatagactggttcaacctc...
Basic information
species | Arabidopsis thaliana |
transcript | AT4G33760.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G33760.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os01g06020.1 (Oryza sativa), 5'ss of exon 9
GCTGAATCAAAGTTTGGCTATCTTCTGGAGGCTCTTGACATGGGTGCTCCTCCTCATGgtatgtaaatatttcttaaggtcaaaaaatctgagacttaagaatagatta-atacaacatcgttacgtatatgcttaagagtatag-actggttcaacctc--
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GCAGAGGAAAAATTTGGCTATCTTTTAGAATGTTTTGACATGGGTGCTCCTCCTCATGgtatgcta----tgttcaaccactgaactccatgtacatatttttggattagatttgagattttggatcgcatactgaactttctattactactatatgcttgt
upper sequence: AT4G33760.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA05G34820.1 (Glycine max), 5'ss of exon 14
GCTGAATCAAAGTTTGGCTATCTTCTGGAGGCTCTTGACATGGGTGCTCCTCCTCATGgtatgtaaatatttcttaaggtcaaaaaatctgagacttaagaatagattaatacaacatcgttacgtatatgcttaagagtat-agactggttcaacctc
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GCTGAAGCAAAGTTTGGTTATCTTCTTGAAGCGCTTGACATGGGGGCTCCACCACATGgtatgcagatttgtacacgttctaaaatagtttatagctcaaatcctcttttttcctttgagaaactatcctggttaacatcattggtctgtgtccattg-
upper sequence: AT4G33760.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv03s0088g00500.t01 (Vitis vinifera), 5'ss of exon 14
GCTGAATCAAAGTTTGGCTATCTTCTGGAGGCTCTTGACATGGGTGCTCCTCCTCATGgtatgtaaatatttcttaaggtcaaaaaatctgagacttaag---aatagattaatacaacatcgttacgtatatgct-taagagtatagactggttcaacctc
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GCTGAGGCAAAGTTTGGCTACCTTCTAGAGGCTCTGGACATGGGTGCTCCTCCACATGgtaagaaacacattcccctagccagagtatt--gttcttaagtgtaatggactaacagatgcatgtcccttgcatagtatgattccttctcacgaataaatg--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124764767|gb|EH854897.1|EH854897EST: AAAGTTTGGCTATCTTCTGGAGGCTCTTGACATGGGTGCTCCTCCTCATG GTGGAATTGCTTATGGATTAGGATAGAATGGTGATGATGCT
genomic: AAAGTTTGGCTATCTTCTGGAGGCTCTTGACATGGGTGCTCCTCCTCATGgtatgtaaat ... gaaattacagGTGGAATTGCTTATGGATT-GGATAGAATGGTGATGATGCT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGAATCAAAGTTTGGCTATCTTCTGGAGGCTCTTGACATGGGTGCTCCTCCTCATGgtatgtaaatatttcttaaggtcaaaaaatctgagacttaagaatagattaatacaacatcgttacgtatatgcttaagagtatagactggttcaacctc
- - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaataga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatacaac