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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCCCTTCTTTCAGGTTATATTGACAATGAGGATTCATCTGTCCGAATTGGTGCTATTATGGGTCTCGGGATTGCATATGCGGGTTCCCAAAATGATCAGgtgaatacatgttatcttcttacctatggtgctaagttgaatgttctgttgacgagacaataacatgctcactgtttggatag

Basic information

species Arabidopsis thaliana
transcript AT4G28470.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA12G13410.1 (Glycine max), 5'ss of exon 16
TGCCCTTCTTTCAGGTTATATTGACAATGAGGATTCATCTGTCCGAATTGGTGCTATTATGGGTCTCGGGATTGCATATGCGGGTTCCCAAAATGATCAGgtgaatacatgttatcttcttacctatggtgctaagttgaatgttctgttgacgagacaataacatgctcactgtttggatag-----------------------------------
 || |||||    |  ||||| || || || ||  | ||     | |||||||| ||||||||| | || ||||||||||| |||||||| ||||| ||||||      | || |||  || | | ||       ||| | |  | |  | | |||| |    ||| || ||| |||| | |                                    
GGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAACAAGGATTGGTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAGgtgttctgtttttctctaatttctt-tgaaatcttgtt-agtaatataat-atgagata----catacttactatttgcaaatgtaaaaagtttttaatttattctcgtttctttcag

upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA06G44340.1 (Glycine max), 5'ss of exon 16
TGCCCTTCTTTCAGGTTATATTGACAATGAGGATTCATCTGTCCGAATTGGTGCTATTATGGGTCTCGGGATTGCATATGCGGGTTCCCAAAATGATCAGgtgaatacatgttatcttc-ttacctatggtgctaagttgaatgttctgttgacgagacaataacatgctcactgtttggatag---------------------------------
 || |||||    |  ||||| || || || ||  | ||  || | |||||||| ||||||||| | || ||||||||||| |||||||| ||||| ||||||      | || |||   ||   |    |  |      ||| || | |||  |||| |   |  | || ||| |||| | |                                  
GGCACTTCTAGGTGACTATATAGATAAAGAAGACACTTCAATCAGGATTGGTGCAATTATGGGTTTGGGAATTGCATATGCTGGTTCCCAGAATGAGCAGgtgttctgtttttctctaaattttttgaaatcttgttagtaatattat-ttgttgagatacatat-tacttactatttgcaaatgcattttttaaaatatattcttgcttctttcag

upper sequence: AT4G28470.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 5'ss of exon 16
TGCCCTTCTTTCAGGTTATATTGACAATGAGGATTCATCTGTCCGAATTGGTGCTATTATGGGTCTCGGGATTGCATATGCGGGTTCCCAAAATGATCAGgtgaatacatgttatcttcttacctatggtg---ctaagttgaatg----ttctgttgacga--gacaataacatgctcactgttt---ggatag------
 || ||| |  | | ||| || | ||| |||||| ||||  ||||||||||||| ||| ||||||| ||  |||| ||||| ||||  |||||||||||||||||      || | |     |   || ||    |  |  ||||     || ||||   |   |  |    ||||   ||| |||      ||       
GGCACTTTTAGCTGATTACATAGGCAAAGAGGATCCATCAATCCGAATTGGTGCAATTCTGGGTCTAGGTCTTGCTTATGCCGGTTGTCAAAATGATCAGgtgaa-gttcattgtttctgggctggtgttgggtttgggaagaatagaaattatgttagtgtatggtagatgcatgacaactctttcccacttaacttgag