Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATGAAGGGGATGGAATTGATTGGACTAAGGTCGAATTCATAGACAATCAAGAGTGTCTAAATCTGATTGAGAAGgtaagttttgtagcgtgccatcttactcatcttgtctttcctccttatggaaagggattgtataatgctttgctccaaactatgacattaaggttttttcttacatgttttagaaaaccatttcgcacatcttttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G27370.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G27370.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: PP1S17_368V6.1 (Physcomitrella patens), 5'ss of exon 14
GAATATGAAGGGGATGGAATTGATTGGACTAAGGTCGAATTCATAGACAATCAAGAGTGTCTAAATCTGATTGAGAAGgtaagt---tttgtagcgtgccatcttactcatcttgtctttcctccttatggaaagggattgtataatgctttgctccaaactatgacattaaggttttttcttacatgttttagaaaaccatttcgca-catctt-ttgcag---------------------------------------
|| |||  |   ||    ||||||||||| |  || || ||   ||||||||||||||||||  |||| ||||||||||||       || |   |     |  ||  ||  |   ||   |  |  ||   ||   |||    | |   |||  ||      ||  |||  |     |||  | ||  | |  || |||| | |  | ||| |  |||| |                                       
GAGTATACATCCGAAAATATTGATTGGACAAGAGTGGATTTTGAAGACAATCAAGAGTGTCTTGATCTTATTGAGAAGgtatacatgctttttatgactttttctaggcacatgaactgatcgaca-atccgaacaaattaccgattttgttggaccgggtcttgttattgcgaaaagttc--aaataatgtgtaagaccactgcaaatcatatcattgcggataataaacctaacaatgttatggacatacactgggcag