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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttacatctttaccgggagagtttagcttttacttagcaggatcatatacattaactcaaaaaacatatatacatggtgtgtatag

Basic information

species Arabidopsis thaliana
transcript AT4G25070.2
intron # 14
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116426422|gb|EG469014.1|EG469014
EST:     AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAG                         GCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
EST: gi|116426415|gb|EG469007.1|EG469007
EST:     AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAG                         GCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
EST: gi|116426421|gb|EG469013.1|EG469013
EST:     AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAG                         GCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
EST: gi|116426413|gb|EG469005.1|EG469005
EST:     AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAG                         GCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
EST: gi|116426408|gb|EG469000.1|EG469000
EST:     AGTTGAGTCATGACGAGCAACAAGATATTCTCTTTAAAGAG                         GCATGGCTGCTGTATTTCTGG
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGG
EST: gi|116426418|gb|EG469010.1|EG469010
EST:     AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAG                         GCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT
genomic: AGTTGAGTCATGATGAGCAACAAGATATTCTCTTTAAAGAGgtaagttaca ... gtgtgtatagGCATGGCTGCTGTATTTCTGGAAAAGAGCTAAAATTCATGGCGTGGAAAGT