1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
TAATAAGCAAGCTTACATGCGCGGAAAGAGAGTCCTCGAGATCAACCCACGACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAGgtaaaacaaacataagacccatcaattcttttttttacttactgtctattagagaaataaactaacataccaaattctctcag
species | Arabidopsis thaliana |
transcript | AT4G24190.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAG GATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATCEST: gi|47829028|gb|CK118712.1|CK118712
genomic: GACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAGgtaaaacaaa ... attctctcagGATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATC
EST: GACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAG GATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATCEST: gi|47829573|gb|CK119257.1|CK119257
genomic: GACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAGgtaaaacaaa ... attctctcagGATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATC
EST: GACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAG GATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATCEST: gi|164231689|gb|EL998568.1|EL998568
genomic: GACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAGgtaaaacaaa ... attctctcagGATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATC
EST: GGATAGAATTGCAAGTGACCCAGAG GATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATCEST: gi|164151723|gb|ES048230.1|ES048230
genomic: GGATAGAATTGCAAGTGACCCAGAGgtaaaacaaa ... attctctcagGATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATC
EST: GAATTGCAAGTGACCCAGAG GATGAGAGTGTGAAGGAAACAGCACAGCTCATAGTACCAGACEST: gi|164003243|gb|ES077970.1|ES077970
genomic: GAATTGCAAGTGACCCAGAGgtaaaacaaa ... attctctcagGATGAGAGTGTGAAGGAAACAGCACAGCTCAT-GTACCAGAC
EST: ACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCCAGAG GATGAGAGTGTGAAGGAAACAGCACAGCTCAEST: gi|124771672|gb|EH861802.1|EH861802
genomic: ACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCC-AGAGgtaaaacaaa ... attctctcagGATGAGAGTGTGAAGGAAACAGCACAGCTCA
EST: TAGAATTGCAAGTGACCCAGAG GATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATCEST: gi|86058796|gb|DR354553.1|DR354553
genomic: TAGAATTGCAAGTGACCCAGAGgtaaaacaaa ... attctctcagGATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATC
EST: GACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAG GATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATCEST: gi|125230391|gb|EL244476.1|EL244476
genomic: GACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAGgtaaaacaaa ... attctctcagGATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCAGACAGCTTTGATC
EST: GAACTACAAGGATAGAATTGCAAGTGACCCAGAG GATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCA
genomic: GAACT-CAAGGATAGAATTGCAAGTGACCCAGAGgtaaaacaaa ... attctctcagGATGAGAGTGTGAAGGAAACAGCACAGCTCATGTACCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATAAGCAAGCTTACATGCGCGGAAAGAGAGTCCTCGAGATCAACCCACGACACCCTATCATCAAAGAACTCAAGGATAGAATTGCAAGTGACCCAGAGgtaaaacaaacataagacccatcaattcttttttttacttactgtctattagagaaataaactaacataccaaattctctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC