1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ACGCGACAGCGGGATTCCATTTGCAATTGTACGGCCATGTGCTTTAACAGAAGAGCCTGCCGGAGCTGATCTCATTTTCGAACAAGGAGACAACATTACGgtattttcaatttcgcttctccttgaaatccaacaactctttaagttaactaacctaaccaactttacctttatatag
species | Arabidopsis thaliana |
transcript | AT4G18810.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: AAGAGCCTGCCGGAGCTGATTTCATTTTCGAACAAGGAGACAACATTACG GGGAAGGTATCAAGAGACGAAGTAGCGGGTATATGCATCGCTGCTTTAGAAEST: gi|124722388|gb|EH813790.1|EH813790
genomic: AAGAGCCTGCCGGAGCTGATCTCATTTTCGAACAAGGAGACAACATTACGgtattttcaa ... ctttatatagGGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGCTTTAGAA
EST: AAGAGCCTGCCGGAGCTGATCTCATTTTCGAACAAGGAGACAACATTACG GGGAAGGTATCAAGAGACEST: gi|116396418|gb|EG439010.1|EG439010
genomic: AAGAGCCTGCCGGAGCTGATCTCATTTTCGAACAAGGAGACAACATTACGgtattttcaa ... ctttatatagGGGAAGGTATCAAGAGAC
EST: AAGAGCCTGCCGGAGCTGATCTCATTTTCGAACAAGGAGACAACATTACG GGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGCTTTAGAAEST: gi|124921376|gb|EH994999.1|EH994999
genomic: AAGAGCCTGCCGGAGCTGATCTCATTTTCGAACAAGGAGACAACATTACGgtattttcaa ... ctttatatagGGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGCTTTAGAA
EST: CTGATCTCATTTTCGAACAAGGAGACAACATTACG GGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGCTTTAGAA
genomic: CTGATCTCATTTTCGAACAAGGAGACAACATTACGgtattttcaa ... ctttatatagGGGAAGGTATCAAGAGACGAAGTAGCGCGTATATGCATCGCTGCTTTAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGCGACAGCGGGATTCCATTTGCAATTGTACGGCCATGTGCTTTAACAGAAGAGCCTGCCGGAGCTGATCTCATTTTCGAACAAGGAGACAACATTACGgtattttcaatttcgcttctccttgaaatccaacaactctttaagttaactaacctaaccaactttacctttatatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA