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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCGGACCCTACTGGCCTTCGAGCCCGTATCGAACAATGGACATTTGGCTTATATCCTGCGTGCATCAAGTATCTTATGTCAGCATTTGATGTTCCTGAGgtaaataatgtactgtgttctgtctctgttttgattaaccaaagatcccatttgaaacatcaacctgagtactttaacatcag

Basic information

species Arabidopsis thaliana
transcript AT4G11800.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA17G36310.1 (Glycine max), 5'ss of exon 13
-CCCGGACCCTACTGGCCTTCGAGCCCGTATCGAACAATGGACATTTGGCTTATATCCTGCGTGCATCAAGTATCTTATGTCAGCATTTGATGTTCCTGAGgtaaataa----tgtactgtgttctgtctctgttttgattaaccaaagatcccatttgaaacatcaacctgagtactttaacatcag
  || || || ||||| ||  |||| |||||||||||||||||||||||  | ||||| || || ||||||||| | ||||| || |||||||| || ||||| | |||    | |    | || | | | ||  ||   | |  |  |||||  |     | ||     |   |  |||  ||    
TTCCTGATCCAACTGGACTCAGAGCTCGTATCGAACAATGGACATTTGGACTTTATCCGGCATGTATCAAGTATTTAATGTCTGCTTTTGATGTGCCAGAggtgagtaaattctttgaattattttatttttgacttttcttataatggatcctgtcacggagatggttttctat-ttttctca----

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA14G08860.1 (Glycine max), 5'ss of exon 13
CCCGGACCCTACTGGCCTTCGAGCCCGTATCGAACAATGGACATTTGGCTTATATCCTGCGTGCATCAAGTATCTTATGTCAGCATTTGATGTTCCTGAGgtaaataatgta-ctg---tgttctgtctctgttttgattaaccaaagatcccatttgaaacatcaacctgagtactttaacatcag
 || || || ||||| ||  |||| ||||| |||||||||||||||||  | || || || || ||||||||| | |||||||| |||||||| || ||||| | |||| |  |||   | || | | | ||  ||   | |  |  ||||   |     | ||     |   |  ||     ||||
TCCCGATCCAACTGGACTCAGAGCTCGTATTGAACAATGGACATTTGGACTTTACCCGGCATGTATCAAGTATTTAATGTCAGCTTTTGATGTGCCAGAGgtgagtaatttctctgaattattttatttttgacttatcttataatggatcttgtcacggagatggttttctatttttc----tcag

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 5'ss of exon 14
CCCGGACCCTACTGGCCTTCGAGCCCGTATCGAACAATGGACATTTGGCTTATATCCTGCGTGCATCAAGTATCTTATGTCAGCATTTGATGTTCCTGAGgtaaataatgtactgtgttctgtctctgttttgattaaccaaagatcccatttgaaac--atcaacctgagtactttaacatcag
 ||||| || || ||||||||||| ||||| |||||||||||||||||  | || || || || |||||||| || ||||| |||||||||||||| |||||   ||   | || | | |  ||  |   |  | |||      |||   ||||  |    | ||| || | |  ||  ||    
TCCGGATCCCACAGGCCTTCGAGCTCGTATAGAACAATGGACATTTGGTCTTTACCCGGCATGTATCAAGTACCTCATGTCTGCATTTGATGTTCCAGAGgt---tagaatgctttctccattccattcatataataataggtcatcttctttgctattagtaaacttgtggaaattctcag---

upper sequence: AT4G11800.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: EFJ24167 (Selaginella moellendorffii), 5'ss of exon 13
CCCGGACCCTACTGGCCTTCGAGCCCGTATCGAACAATGGACATTTGGCTTATATCCTGCGTGCATCAAGTATCTTATGTCAGCATTTGATGTTCCTGAGgtaa---ataatgtactgtgttctgtctctgttttgattaaccaaagatcccatttgaaacatcaacctgagtactttaacatcag
 || |||||||| ||  | || || ||||| || |  ||||| || ||||| ||||| |||||| | |||||| | |||||||| ||||||||||| |||||||   | ||  | | || | | ||  | ||||   | |||   |     ||                                 
TCCTGACCCTACGGGTTTACGTGCTCGTATGGAGCGTTGGACTTTGGGCTTGTATCCCGCGTGCTTAAAGTATTTGATGTCAGCTTTTGATGTTCCAGAGgtaaggaaaaacattccgtttgcagtggcggtttc--tgaactggattgtgcag--------------------------------