Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAATAGGTGAAGATGTGAACTTCGATGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAGgtaaaagtcatcatttgctttcctggaaaagttgtgctaagtggtttctcatcgagtcgatatgattttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G04850.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 15
------AAAATAGGTGAAGATGTGAACTTCGATGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAGgtaaaagtcatcatttgctttcctggaaaagttgtgctaagtggtttctcatcgagtcgatatgattttgcag-------------
      ||      |||    || |||||| ||||||||||| |  |||| ||| ||||||||||||||||||| |||||| |     ||| |   |    || |||| ||||  |   |  || |  ||       || |  | ||                 
AAACAGAATGCTTCTGAGACGGTTAACTTCAATGTTAGTGAACCTGTTGTTATCCTTGGATTTGGACAAATGGGCCAGgtaga-----tcaatcaatacattgtaaaacttgtcatttata-ttgccaatttctaaaatttcttcttctgttccatatataaag