1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CATCTCAAAGTCAAACCAATAGAAGAAAACAAGGCCTTCATGACTTTTGTTATACCTCACGACAAAGAGAATCTTTTGACAgtaagcatttacacaaccttatgatatatagatttcactacctaccttaaaactaagcataagtgacaatgaaacag
species | Arabidopsis thaliana |
transcript | AT3G47730.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TTTTGTTATACCTCACGACAAAGAGAATCTTTTGACA AGCTTTTTCGCTGAGCTTCAAGACAGAGAAGAAGAATTTGGAATCTCAGATEST: gi|116447294|gb|EG489886.1|EG489886
genomic: TTTTGTTATACCTCACGACAAAGAGAATCTTTTGACAgtaagcattt ... aatgaaacagAGCTTTTTCGCTGAGCTTCAAGACAGAGAAGAAGAATTTGGAATCTCAGAT
EST: TCATGACTTTTGTTATACCTCACGACAAAGAGAATCTTTTGACA AGCTTTTTCGCTGAGCTTCAAGACAGAGAAGAAGAATTTGGAATCTCAGATEST: gi|124853163|gb|EH937600.1|EH937600
genomic: TCATGACTTTTGTTATACCTCACGACAAAGAGAATCTTTTGACAgtaagcattt ... aatgaaacagAGCTTTTTCGCTGAGCTTCAAGACAGAGAAGAAGAATTTGGAATCTCAGAT
EST: GCCTTCATGACTTTTGTTATACCTTCTACGACAAAGAGAATCTTTTGACA AGCTTTTTCGCTGAGCTTCAAGACAGAGAAGAAGAATTTGGAAT
genomic: GCCTTCATGACTTTTGTTATACC-TC-ACGACAAAGAGAATCTTTTGACAgtaagcattt ... aatgaaacagAGCTTTTTCGCTGAGCTTCAAGACAGAGAAGAAGAATTTGGAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCTCAAAGTCAAACCAATAGAAGAAAACAAGGCCTTCATGACTTTTGTTATACCTCACGACAAAGAGAATCTTTTGACAgtaagcatttacacaaccttatgatatatagatttcactacctaccttaaaactaagcataagtgacaatgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA