1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGCTGCAACTGGTCCAATTGGGAGAGAGTTGTTTGAAAAGGAGCAAGATGACCTTCTTGCTGATTTGAAAGACATTCCTAAGAAAGCTTGTGATCGTCGAgtgagtgtgcacatttcttctttcactccctcctctcattggatttaaccatatttgttttctgtctaatag
species | Arabidopsis thaliana |
transcript | AT3G20290.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ACCTTCTTGTTGATTTGAAAGACATTCCTAAGAAAGCTTGTGATCGTCGA ATAAATGAGTTTGTGAAEST: gi|86078386|gb|DR374143.1|DR374143
genomic: ACCTTCTTGCTGATTTGAAAGACATTCCTAAGAAAGCTTGTGATCGTCGAgtgagtgtgc ... tgtctaatagATAAATGAGTTTGTGAA
EST: ACCTTCTTGCTGATTTGAAAGACATTCCAAAGAAAGCTTGTGATCGTCGA ATAAATGAGTTTGTGAAACGGGCAAGAGCAGCAAAGATACATGCGTACATCEST: gi|125164834|gb|EL191397.1|EL191397
genomic: ACCTTCTTGCTGATTTGAAAGACATTCCTAAGAAAGCTTGTGATCGTCGAgtgagtgtgc ... tgtctaatagATAAATGAGTTTGTGAAACGGGCAAGAGCAGCAAAGATACATGCGTACATC
EST: ACCTTCTTGCTGATTTG-AAGACATTCCTAAGAAAGCTTGTGATCGTCGA ATAAATGAGTTTGEST: gi|124918044|gb|EH991917.1|EH991917
genomic: ACCTTCTTGCTGATTTGAAAGACATTCCTAAGAAAGCTTGTGATCGTCGAgtgagtgtgc ... tgtctaatagATAAATGAGTTTG
EST: GACATTCCTAAGAAAGCTTGTGATCGTCGA ATAAATGAGTTTGTGAAACGGGCAAGAGCAGCAAAGATACATGCGTACATCEST: gi|124788688|gb|EH878367.1|EH878367
genomic: GACATTCCTAAGAAAGCTTGTGATCGTCGAgtgagtgtgc ... tgtctaatagATAAATGAGTTTGTGAAACGGGCAAGAGCAGCAAAGATACATGCGTACATC
EST: AAGCTTGTGATCGTCGA ATAAATGAGTTTGTGAAACGGGCAAGAGCAGCAAAGATACATGCGTACATC
genomic: AAGCTTGTGATCGTCGAgtgagtgtgc ... tgtctaatagATAAATGAGTTTGTGAAACGGGCAAGAGCAGCAAAGATACATGCGTACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTGCAACTGGTCCAATTGGGAGAGAGTTGTTTGAAAAGGAGCAAGATGACCTTCTTGCTGATTTGAAAGACATTCCTAAGAAAGCTTGTGATCGTCGAgtgagtgtgcacatttcttctttcactccctcctctcattggatttaaccatatttgttttctgtctaatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA