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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATAAAATTGGCAGTTCATGCACATCCAACACTCTCTGAGGTCCTCGACGAACTGTTCAAAGCAGCCAAGgtaaagcaaaacagtctcctcatgccattgatcagagagcccctttattcttaactgcaatcaatagatttaagtcctctactaaaaagcaaaagaatcttacactataagttcaatttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G16950.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G16950.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 14
GACATAAAATTGGCAGTTCATGCACATCCAACACTCTCTGAGGTCCTCGACGAACTGTTCAAAGCAGCCAAGgtaaa-----gcaaaacagtctcctcatgccattg--atcagagagcccctttattcttaactgcaatcaatagatttaagtcctctactaaaaagcaaaagaatcttacactataagttcaatttttcag
||||| || || || ||||||||||| |||||| | || ||||| || |||||||| || ||||||||||||||| |     ||    || | | ||| ||   ||   |||   || | | ||| |    | |||||| | ||   |||   |   || |  || ||                                   
GACATCAAGTTTGCTGTTCATGCACACCCAACATTGTCCGAGGTGCTGGACGAACTCTTTAAAGCAGCCAAGgtacacttcagcgctccatttttctcttgtgtttagaatccttgaccacatttctgaacagctgcaagctattcttttttttttccttcccaacag-----------------------------------

upper sequence: AT3G16950.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G152958_T02 (Zea mays), 5'ss of exon 14
GACATAAAATTGGCAGTTCATGCACATCCAACACTCTCTGAGGTCCTCGACGAACTGTTCAAAGCAGCCAAGgtaaa-gcaaaacagtctcctcatgccat-tgatcagagagcccctttattcttaactgcaatcaatag--atttaagtcctctactaaaaagcaaaagaatcttacactataagttcaatttttcag
||||| || || || ||||| ||||| || ||| | ||||||||||| || ||||| |||||||||||||||||| |     | |  |  ||||||  | |      |    |   |||    || || |   | |||  |  |   | |  ||||  |   || ||                                 
GACATCAAGTTTGCTGTTCACGCACACCCTACATTGTCTGAGGTCCTGGATGAACTCTTCAAAGCAGCCAAGgtatacatcgatcgatgccctcatttcttgctgctatcacgtttcttggccctcaattctgaacaagtgcaagcgacgctctctgtttccaa-cag--------------------------------

upper sequence: AT3G16950.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA07G37050.1 (Glycine max), 5'ss of exon 14
GACATAAAATTGGCAGTTCATGCACATCCAACACTCTCTGAGGTCCTCGACGAACTGTTCAAAGCAGCCAAGgtaaagcaa-----aacagtctcctcatgccattgatcagagagcccctttat--tcttaactgcaatcaat--agatttaagtcctctactaaaaagcaaaagaat----cttacactataagttcaatttttcag------------------------------------
||||||||||| ||||||||||||||||||||  | || ||||| || || ||||| |||||| |||| ||||| |   ||     ||   ||| |  ||  | ||  |     | ||   |||      ||||   ||  |||  ||| || |  |    |  |   | |   ||| |    |  ||||    |||| | | |  |||                                    
GACATAAAATTTGCAGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGgtgagctaatccttaattttcttccaataacttttctattctaaccttattaagacaataacaataaggaataaagaattgaaacaaagaacattcaccttcagacttgcacacacacagctagtttattgtcgcaggcgccttaacacatgtgtcttatattactgaggcag

upper sequence: AT3G16950.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA17G03560.1 (Glycine max), 5'ss of exon 14
GACATAAAATTGGCAGTTCATGCACATCCAACACTCTCTGAGGTCCTCGACGAACTGTTCAAAGCAGCCAAGgtaaagcaaaacagtctcctcatgccattgatcagagagcccctttattcttaactgcaatcaatagatttaagtcctctactaaaaagcaaaagaatcttacactataagttcaatttttcag
||||||||||| || |||||||||||||||||  | || ||||| || || ||||| |||||| |||| ||||| |   ||       |||| |    | |  ||  | | |   ||   |  || | | |          ||||| |    || | || |  |||  |  | | || |||               
GACATAAAATTTGCCGTTCATGCACATCCAACTTTGTCCGAGGTTCTTGATGAACTATTCAAATCAGCAAAGgtgagctaa-------tccttaatttact--tccaaaaactttttctattctagccgta----------ttaagacaataacaataaggagaaaagagttgaaac-atag--------------