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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGATGGGACAGAACAACTCAGCTTGTTTCTCTTGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAGgtattccctgtgctatttggtgtttctgggttcttacttttgaagtatcatagcataatttaatggtttacaattgtaaaacttttcttggagtaccata...

Basic information

species Arabidopsis thaliana
transcript AT3G10550.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G046050_T01 (Zea mays), 5'ss of exon 2
TGATGGATGGGACAGAACAACTCAGCTTGTTTCTCTTGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAGgtattccctgtgctat---ttggtgtttctgggttctt---acttttgaagtatcatagcataatttaatggtttacaattgtaaaacttttcttggagtaccata
||||||||||||| | ||||| ||| | ||||| ||||| || |||||||||||||| || ||  |||||||   ||| || ||||||  |  | |||  |    |  ||||   |   | ||   || ||||   | || |  | |||| ||||| |  |||  | |    | | | |  ||| |     
TGATGGATGGGACCGCACAACCCAGTTGGTTTCACTTGCTTGTTTATTGCTTGATCCCTATTATCGAACTTTCAGTGGATTCCAGgtaaacagtttgcagtagacttctgttctggtcctttttggacctttgttttctctt--cttaatataatgatgcacacgtatcctgcctgtttgagagaaa----

upper sequence: AT3G10550.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G449163_T01 (Zea mays), 5'ss of exon 6
TGATGGATGGGACAGAACAACTCAGCTTGTTTCTCTTGCGTGCTTATTGCTTGATCCATACTACAGAACTTTTGCTGGGTTTCAGgtattccctgtgctatttggtgtt-tctgggttcttact---tttgaagtatcatagcataatttaatggtttacaattgtaaaacttttcttggagtaccata
||||||||||||| | ||||| ||| | ||||| ||||| || |||||||||||||| || ||  |||||||   ||| || ||||||  |  | |||  |    |  | |   ||| ||| ||     |    | ||    | |||| ||||| |  |||  | |    | | | |  ||  |     
TGATGGATGGGACCGCACAACCCAGTTGGTTTCACTTGCTTGTTTATTGCTTGATCCCTATTATCGAACTTTCAGTGGATTCCAGgtaaacagtttgcagtagacttctgttctggtcctttctgaacctttgttttctcttcttaatataatgatgcacacgtctcctgcctgtttgagaaaaa----