Sequence
atgc intronic sequence ATGC exonic sequenceGAGGGCTCCAAATGCATCACTGGAAGGTTATGGATCTGCAGCTGTTTTGCCTGAACAAGGAATATATCTAGCTGCATCTATTTACCGGCCTGTTCTTCAGgtttagattctggttcatctaagcatcttcattcaatgtcatcagttttttttgtagacttatgatcttatgtgtcttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G10380.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G10380.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA20G32370.1 (Glycine max), 5'ss of exon 14
GAGGGCTCCAAATGCATCACTGGAAGGTTATGGATCTGCAGCTGTTTTGCCTGAACAAGGAATATATCTAGCTGCATCTATTTACCGGCCTGTTCTTCAGgt-ttagattctggttcatc-taagcatcttcattcaatgtc-atcagttttttttgtagacttat----gatcttatgtgtcttgcag
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GAAGGGTCCCAATGTGCTTCAAGAGGGTTATGGTTCTGCAGCAGTTTTGCCTGAGGAAGGCATATATTTAGCGGCATCCATATACCGACCTGTGCTTCAGgtgttgcatattggattgccatactcctttgtatgaagttttgatcatgttccttattgtgtttgttgttgacctggttctttgtgcag
upper sequence: AT3G10380.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA10G35190.1 (Glycine max), 5'ss of exon 14
GAGGGCTCCAAATGCATCACTGGAAGGTTATGGATCTGCAGCTGTTTTGCCTGAACAAGGAATATATCTAGCTGCATCTATTTACCGGCCTGTTCTTCAGgt-ttagattctggttcatc-taagcatcttcattcaatgtc---atcagttttttt----tgtagacttatgatcttatgtgtcttgcag
|| || ||| |||| | || |||||||| |||||||| ||||||||||| | || |||||| |||| ||||| || ||||| ||||| |||||||| || || || | | || | | | | || || |||| || || ||| | ||| || | | |||||
GAAGGGTCCCAATGTGCTTCAAGAGGGTTATGGTTCTGCAGCAGTTTTGCCTGAGGAGGGCATATATTTAGCAGCATCCATATACCGACCTGTGCTTCAGgtgttgcatattgaattgccatactccttgttgtgtaaagttttgatcatgttccttgtcgtgtttgttgttgacctggttctttgtgcag
upper sequence: AT3G10380.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv13s0019g04770.t01 (Vitis vinifera), 5'ss of exon 12
GAGGGCTCCAAATGCATCACTGGAAGGTTATGGATCTGCAGCTGTTTTGCCTGAACAAGGAATATATCTAGCTGCATCTATTTACCGGCCTGTTCTTCAGgtttaga-------------ttctggttcatctaagcatcttcattca-atgtcatcagttttttttgtagacttat---gatcttatgtgtcttgcag
||||| ||| |||| || || ||||||||||| ||||||||| | || ||||| ||||| || ||||| || || ||||| ||||| |||||| |||||||||| || | | || | | || || | || ||| |||||| | | ||| | || ||||||| |||||
GAGGGGTCCTAATGTATTACAAGAAGGTTATGGTTCTGCAGCTATCTTACCTGAGCAAGGCATTTATCTTGCAGCGTCTATATACCGTCCTGTTATTCAGgtttaagagatcaatgctatttatcatatattagatgacctctgcacataggttatcctttttttaatttgccttgttctaatattatgtgatctgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86063582|gb|DR359339.1|DR359339EST: CTGAACAAGGAATATATCTAGCTGCATCTATTTACCGGCCTGTNCTTCAG TTTACAGATAAAATCACTTCNATGNTGCCCAAAAAGCATTCCCAGCTTGT
genomic: CTGAACAAGGAATATATCTAGCTGCATCTATTTACCGGCCTGTTCTTCAGgtttagattc ... tgtcttgcagTTTACAGATAAAATCACTTCAATGTTGCCCAAAAAGCATTCCCAGCTTGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGGGCTCCAAATGCATCACTGGAAGGTTATGGATCTGCAGCTGTTTTGCCTGAACAAGGAATATATCTAGCTGCATCTATTTACCGGCCTGTTCTTCAGgtttagattctggttcatctaagcatcttcattcaatgtcatcagttttttttgtagacttatgatcttatgtgtcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC