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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAATTCTGAATTTGATTTCTACTCTTATTGGCCATGTTAGCGAAGTCATTCCGTACGCACAAAAGTTGGTGCAATTCTTCCAGAAGgtatactagctttctttgtggatttgtttttttgttttttcttttcttggtccgcaatttatagctgactatctatgtggttgacttaagaacag

Basic information

species Arabidopsis thaliana
transcript AT3G08960.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G08960.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA07G18530.1 (Glycine max), 5'ss of exon 14
GTTCAAATTCTGAATTTGATTTCTACTCTTATTGGCCATGTTAGCGAAGTCATTCCGTACGCACAAAAGTTGGTGCAATTCTTCCAGAAGgta-tactagctttctttgtggatttgtttttttgttttttcttttcttggtccgcaattta-tagctgactat-ctatgtggttgacttaagaacag-----
||||| ||| |||||||||| ||||  ||||| || |||||||| ||||| ||||| |  ||| | |||||||||||||| || |||||||||  || ||   | |     || || || |||| |||| | |  |     |  | | |||| ||  ||  ||   |  |||   ||   | |  ||      
GTTCAGATTTTGAATTTGATCTCTATCCTTATCGGACATGTTAGTGAAGTTATTCCATTTGCAAACAAGTTGGTGCAATTTTTTCAGAAGgtaacacaagaaatatcca--gactttttcttttattttgtttactaacc-tttgtattttaatacttggttaggttcagtgaaagaaaaaggtgcatttttt

upper sequence: AT3G08960.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA16G19490.1 (Glycine max), 5'ss of exon 16
GTTCAAATTCTGAATTTGATTTCTACTCTTATTGGCCATGTTAGCGAAGTCATTCCGTACGCACAAAAGTTGGTGCAATTCTTCCAGAAGgta-tactagctttctttgtggatttgtttttttgttttttcttttcttggtccgcaattta-tagctgactatct--atgtggttgacttaagaacag----
||||| ||| |||||||||| ||||  |||||||| |||||||| ||||| ||||| |  ||| | ||||||||||| || || |||||||||  || ||   | |     || || || |||| |||| | |  |     |  | | |||| ||  ||| || ||  ||  |||| | | ||  | |     
GTTCAGATTTTGAATTTGATCTCTATCCTTATTGGACATGTTAGTGAAGTTATTCCATTTGCAAACAAGTTGGTGCAGTTTTTTCAGAAGgtaacacaagaaatatcca--gactttttcttttattttgtttactaacc-tttgtattttaatacttgaataacttgattaggttcagtgaaagaaaaaggt

upper sequence: AT3G08960.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA18G43420.1 (Glycine max), 5'ss of exon 14
GTTCAAATTCTGAATTTGATTTCTACTCTTATTGGCCATGTTAGCGAAGTCATTCCGTACGCACAAAAGTTGGTGCAATTCTTCCAGAAGgta-tactagctttctttgtggatttgtttttttgttttttcttttcttggtccgcaatttatagctgactat-ctatgtggttgacttaagaacag------
||||| ||| |||||||||| ||||  || || || |||||||| ||||| ||||| |  ||| | |||||||||||||| || |||||||||  |||||   | |       ||| |||| || | | ||||    || ||      || |||  ||  ||   |   ||   ||   | |  ||       
GTTCAGATTTTGAATTTGATCTCTATCCTCATCGGACATGTTAGTGAAGTTATTCCATTTGCAAACAAGTTGGTGCAATTTTTTCAGAAGgtaacactagaaatatccagtcttttattttattttgtcttctaacttttgtatt---ttaatacttggttaggttcaatgaaagaaaaaggttcattttttt