Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATGGGAAACCATGTAGCTGTGACAGTTGGTGGGTCAAATGGTCATTTCGAATTGAATGTATTCAAGCCGGTGATCGCGAGTGCTCTTTTACATgtatgtcaatcattttcattctacgtctgtttccttgattttatataaaaatataccagtcttaaccatttgatctcgcctctttgacag

Basic information

species Arabidopsis thaliana
transcript AT2G47510.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA02G01920.1 (Glycine max), 5'ss of exon 13
GTTATGGGAAACCATGTAGCTGTGACAGTTGGTGGGTCAAATGGTCATTTCGAATTGAATGTATTCAAGCCGGTGATCGCGAGTGCTCTTTTACATgtatgtcaatcattttcattctacgtctgtttccttgattttatataa--aaatataccagtcttaaccatttgatctcgcctc--tttgacag--------
|| || ||||||||||| || || ||||| ||||| |||||||||||||| ||  | ||||| ||||||||  |||| || |||  |||  | |||||||||      | |   || |  |  |||| | ||  || || || |  || || |  |     |||  | |||    || |   ||||            
GTCATAGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATgtatgttttatgtataacttttgtgg-tgttacgttatttctaaattatcaattacataaaggggaact-tctgactaggcattattttggttcatttttat

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA10G02040.1 (Glycine max), 5'ss of exon 13
GTTATGGGAAACCATGTAGCTGTGACAGTTGGTGGGTCAAATGGTCATTTCGAATTGAATGTATTCAAGCCGGTGATCGCGAGTGCTCTTTTACATgtatgt--caatcattttcattctac-gtctgtttccttgatttt-----atataaaaatataccagtc-ttaaccatttgatctcgcctctttgacag-
|| || ||||||||||| || || ||||| ||||| |||||||||||||| ||  | ||||| ||||||||  |||| || |||  |||  | |||||||||   |   | |||  |  |    | |  || ||| ||| |     | |||||     || | |   || || |||  ||| |     ||  |   
GTCATTGGAAACCATGTTGCAGTTACAGTGGGTGGATCAAATGGTCATTTTGAGCTTAATGTGTTCAAGCCAATGATTGCCAGTTGTCTCCTGCATgtatgttttatatacttttgtggtgttatgttatttcttaattatcaagtacataaaggggaactactgactagccgtttagtctggttcaattttctta

upper sequence: AT2G47510.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv14s0060g01700.t01 (Vitis vinifera), 5'ss of exon 11
GTTATGGGAAACCATGTAGCTGTGACAGTTGGTGGGTCAAATGGTCATTTCGAATTGAATGTATTCAAGCCGGTGATCGCGAGTGCTCTTTTACATgtatgtcaatcattttcattctacgtctgtttccttgattttata----taaaaatataccagtcttaaccatttgat--ctcgcctctttgacag-----
||||||||||||||||| ||  | ||||| ||||| |||||||||||||| ||  | ||||||| ||||||| |||| || || |  || |||| |||||||   |  ||   | |     |   | |  |  | ||| ||    |||| |    ||| |     | ||| |||   |  |  | ||| |       
GTTATGGGAAACCATGTGGCCATTACAGTGGGTGGATCAAATGGTCATTTTGAGCTCAATGTATACAAGCCGCTGATTGCTAGCGGCCTCTTACGTgtatgttt-tagttgctacttgttattaatgttttgtactttgtaactttaaagaagctccatttagttctattggatatttttctgcattggcttctttt