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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTCTTTCCCCTGTAACTCTAAGGATGATGGAGGATATGAGAAACCAGTTTCTTGATCTTCTATCAGATATAGGGTTTGTAGACAAATCAAAGCCAAATgtaagcatcaggaacccgtcctaatacttcaattatattttcgaaccctgataaaatgtgaaactactgatcattttcatttgcaaatggtgcttttcag

Basic information

species Arabidopsis thaliana
transcript AT2G35920.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 14
CTTTCTTTCCCCTGTAACTCTAAGGATGATGGAGGATATGAGAAACCAGTTTCTTGATCTTCTATCAGATATAGGGTTTGTAGACAAATCAAAGC---CAAATgtaagcatcaggaacccgt--cctaatacttcaattatattttcgaaccctgataaaatgtgaaactactgatcattttcatttgcaaatggtgcttttcag
     | || ||  ||||  |   ||||||||| ||||||||||| || ||||| ||||| || ||||| || || ||||| |||||||| |||    | | |||||||   | |  |   |  | |  |  |||   |  | ||    | | | |   | ||| ||     | |  | |      ||||||   | |  |  | 
---CTTATCACCAATAACCTTGCAGATGATGGATGATATGAGAAATCAATTTCTAGATCTACTGTCAGACATTGGCTTTGTGGACAAATCCAAGGGTGCTATTgtaagctctaagctctgattgcttcctgtttcctctgaagttatttatcttta-gcactgttaattacatcacaagtggtcaatgcaaaaaattccctaga-