Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACTCAAGgtgtttctctcatcacattgttcatcctcgctagcataaacagcttctagaatcttacacacaaaatctttctttgatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G33210.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os10g32550.1 (Oryza sativa), 5'ss of exon 15
TGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACTCAAGgtgtttctctcatcaca-ttgttcatcctcgctagcataaacagcttcta-gaatcttacacacaaaatctttctttgatgcag
 |||||||| ||| | ||||| || || || || || ||  |  | || |||||||||||||| || |||||||| ||||||||||| || ||  | ||||| |       || | |  |  ||||   |  |       |   |||||  |      | ||   |   |    | |  |||||
AGGTGTTGCACTTCTTTATGCATCAAAGGAGCTGGATAAATTGCCGACTGCTAACTTTGATCAAAAGATTGGTGTACAAATCATTCAGAATGCTTTGAAGgtttgggagggataataacttctcatttcctgttttgctgatttcttctctgggagcaaaacctgatgacaacttattttgcag

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G416120_T01 (Zea mays), 5'ss of exon 14
TGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACTCAAGgtgtttctctcatcacattgttcatcctcgctagcataaacagcttctagaatcttacacacaaaatctttctttgatgcag
||||||||||||| | ||||| ||||| || || || ||| |    ||||| || ||||||||||| |||||||| ||||||||||| || ||  | |||||  |      |  |  |||    |  || |    ||  | |  |    |         |    ||| |||  |  ||||||
TGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTCGATAAGTTGCAGACAGCAAATTTTGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgt-ctgggagaagaatgttggattttttcccccagattcatacttgtgtgctaagctggcgtggaatattttgt--atgcag

upper sequence: AT2G33210.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G111477_T01 (Zea mays), 5'ss of exon 3
TGGTGTTGCTCTTTTGTATGCTTCGAAAGAACTTGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGCACTCAAGgtgtttctctcatcacattgttcatcctcgctag-cataaacagcttctagaatcttacacacaaaatctttctttgatgcag
||||||||||||| | ||||| ||||| || ||||| ||  |    ||||| ||||| |||||||| |||||||| ||||||||||| || ||  | |||||         |  |  |||    || |  |  | |    |||  ||    || || |||  ||| || ||      ||||||
TGGTGTTGCTCTTCTCTATGCATCGAAGGAGCTTGATAAATTGCAGACAGCGAACTTCGATCAGAAGATTGGTGTGCAAATCATTCAGAATGCTTTGAAGgtccggtggcaagaaagttggatgtcttttcaggactcgtacatgtttgctaacctaacatgcaatattttgt----atgcag