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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTACAAGAGTTTACTGCATCTGAAACTGATGGTCAAATATCAAAACACTTTCGAATGgtaagctaaattagatattcaagaagcttctttcgttattggttgctagtgtttcatcatctgcttacacttgtacttgtattatgcag

Basic information

species Arabidopsis thaliana
transcript AT2G25050.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G25050.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv04s0008g06530.t01 (Vitis vinifera), 5'ss of exon 17
GGCAGAGGAGATGCAAGCAATTAGCAAAGGGTTGGAGAAAGTTGTACAAGAGTTTACTGCATCTGAAACTGATGGTCAAATATCAAAACACTTTCGAATGgta----agctaaattagatattcaagaagcttctttcgttattggttgctagtgtttcatcat-ctgcttacacttgtacttgtattatgcag-------
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GGCAGAGGAAATGCAAGCTATTAGTAAAGGGCTTGAGAAAGTTGTCCAAGAACTGACTGCATCAGAAAATGATGGTCCTGTGTCTGAAAACTTTTGCAAGgtactttatataaatgaacttcttaagtattcatctatgtggatgaa-gtttgtgcattttcatgctgcttggattgctgcagctgatagatattattgtt