1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CGGCGGGAGGTGCTTGGGACAATGCAAAGAAATACATAGAGACCGGGGCACTTGGGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATACgtaagtattttcgttctacttcaacactcattcaaagttatattcctgaatacgatttctcattagaattcatctgaaaattgtag
species | Arabidopsis thaliana |
transcript | AT1G78920.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CTTGGGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATAC CGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCATEST: gi|164184412|gb|ES047969.1|ES047969
genomic: CTTGGGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATACgtaagtattt ... aaaattgtagCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCAT
EST: TGACTGGTGATAC CGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCAAEST: gi|124940319|gb|EL016781.1|EL016781
genomic: TGACTGGTGATACgtaagtattt ... aaaattgtagCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCA-
EST: GGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATAC CGTGGGAGATCCGTTCAAGGACACAAGCCGGTCCATCCATCCACGTCCTCAEST: gi|124926367|gb|EL004217.1|EL004217
genomic: GGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATACgtaagtattt ... aaaattgtagCGTGGGAGATCCGTTCAAGGACACA-GCCGGTCCATCCATTCACGTCCTCA
EST: GGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATAC CGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCAT
genomic: GGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATACgtaagtattt ... aaaattgtagCGTGGGAGATCCGTTCAAGGACACAGCCGGTCCATCCATTCACGTCCTCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGGGAGGTGCTTGGGACAATGCAAAGAAATACATAGAGACCGGGGCACTTGGGGGCAAAGGAAGTGAAGCTCACAAAGCAGCTGTGACTGGTGATACgtaagtattttcgttctacttcaacactcattcaaagttatattcctgaatacgatttctcattagaattcatctgaaaattgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG