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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAACGGCTGAAGGAGACTCAAAACATCAACAAATCATTATCTGCTCTTGGTGATGTCATATTCGCTCTTGCCAACAAAAGCTCTCACATTCCTTTCAGgtcaatatgatacatctatttttctctaaagaaggttacagtcaccatttttcatctaactttatgtttggcttgcatactgataagatcaaatacctttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G72250.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G72250.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G400223_T01 (Zea mays), 5'ss of exon 10
GAGAACGGCTGAAGGAGACTCAAAACATCAACAAATCATTATCTGCTCTTGGTGATGTCATATTCGCTCTTGCCAACAAAAGCTCTCACATTCCTTTCAGgtcaatatgatacatctatttttctctaaagaaggttacagtcaccatttttcatctaactttatgtttggcttgcatactgataagatcaaatacctttgcag
||||| |  |||| ||  | || || || ||||||||| | ||||| |||||||||||||||| ||||||||| |  || | ||| || || || || ||||  || | |   || |   |  || ||   ||| ||         |||  || | |||||| |  | || |   | ||  ||||   |    |    || |||
GAGAAAGATTGAAAGAAGCACAGAATATAAACAAATCACTTTCTGCACTTGGTGATGTCATATCCGCTCTTGCAACAAAGACCTCACATATACCCTTTAGgt--atttaa---atttgagtc-ctttatttaagttt--------tattagtcttgtaacttaaattatgacc-acttatagatag--ttgttttaaattacag

upper sequence: AT1G72250.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA15G40350.1 (Glycine max), 5'ss of exon 13
GAGAACGGCTGAAGGAGACTCAAAACATCAACAAATCATTATCTGCTCTTGGTGATGTCATATTCGCTCTTGCCAACAAAAGCTCTCACATTCCTTTCAGgtcaatatgatacatctatttttctctaaagaaggttacagtcacc--atttttcatctaactttatgtttggcttgcatactgataagatcaaatacctttgcag
| ||  | || |||||||| ||||| || || |  ||  | ||||| ||||||||||||||||  |||||||| |  ||||| || |||||||||||||||| |     | | |  | ||      |      | |||||    |   | | |   | |    |  || |||| ||  | | |  |    |  |       |||||
GCGATAGACTAAAGGAGACACAAAATATTAATAGGTCTCTCTCTGCACTTGGTGATGTCATATCAGCTCTTGCAACAAAAAGTTCACACATTCCTTTCAGgttatgtcaacataagttttagctcatgttttcgattacaaatgctgaaatatctttttggtctattggttggttttgaaatttttgttcttca----tgctgcag

upper sequence: AT1G72250.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA08G18590.1 (Glycine max), 5'ss of exon 13
GAGAACGGCTGAAGGAGACTCAAAACATCAACAAATCATTATCTGCTCTTGGTGATGTCATATTCGCTCTTGCCAACAAAAGCTCTCACATTCCTTTCAGgtcaatatgatacatctatttttctctaaagaaggttacagtcaccatttttcatctaactttatgtttggcttgcatactgataagatcaaatacctttgcag------------
| ||  | ||||||||||| ||||| || || |  ||  | ||||| ||||||||||||||||  |||||||| |  ||||| || |||||||||||||||| |     ||| |   ||||||  || | |    || || || | | |  | |  | | |     | |   | |  ||||| | ||     | |  ||||               
GTGATAGACTGAAGGAGACACAAAATATTAATAGGTCTCTCTCTGCACTTGGTGATGTCATATCAGCTCTTGCAACAAAAAGTTCACACATTCCTTTCAGgttatgtcaatata---atttttagctcatgt---tttcaatcccaaatgctgaaatgaatcaccatctt-ttggtctactggtcagtattgaaatttttgttcatcatgttgcag