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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATTGTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGgtaaaactgacaaatgtcattattggttgtagacaatatgtagaataaccaattacctttgaccaatttctaaatatttgctccatag

Basic information

species Arabidopsis thaliana
transcript AT1G70730.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70730.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os03g50480.1 (Oryza sativa), 5'ss of exon 14
AACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATTGTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGgtaaaactgacaaatgt-cattattggttgtagacaatatgtagaataaccaattacctttgaccaatttctaaatatttgctccatag
   |     |||    |  || || || || |||||||| ||||| ||||||||||||| ||| ||||| || || ||||| || ||||| ||||||||||||      |||||| | || | |   ||   |   || | || |  |       || |   | | ||  |    | ||    |   ||
GGACAACCTTGGAGGCGATAAGCTTGTTACTGTTGAAGATATTGTTCGCCAGCACTGGGGTACTTATGGTCGCCATTATTATACACGATATGACTATGAGgtactttacacaaatattcaatgtacatttatgtgtatgtatata-catttggcaacatgctaaccatgccatttttttcttcctgaag

upper sequence: AT1G70730.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G023289_T03 (Zea mays), 5'ss of exon 14
---AACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATTGTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGgtaaaactgacaaatgtcattattggttgtagacaatatgtagaataaccaattacctttgaccaatttctaaatatttgctccatag-----
    | |||||  ||  ||   || || || || |||||||| |||||||| ||||| ||||| |||||||| || || |||||||| || || ||||||||||||   ||  |   | |    ||  |   |  | | ||||||  | |           |  | || | |  | | ||| | |   | |     
GGACAACCTTGGAGGAGAT---AAGCTTGTCACTGTTGAAGATATTGTCCGTCAGCATTGGGCCACATATGGTCGCCATTATTACACACGCTATGACTATGAGgta---cttcctttttttcacatgtgccttgcata-tatgtaccacatgtttcagatatatatcattctaaatacattagtttgtttgtgaag

upper sequence: AT1G70730.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G109383_T02 (Zea mays), 5'ss of exon 14
---AACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATTGTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGgtaaaactgac------aaatgtcattattggttgtagacaatatgtagaataaccaattacctttgaccaatttctaaatatttgctccatag
    | |||||  ||  ||   || || || || |||||||| |||||||| ||||||||||| |||||||| || || || ||||| || || ||||||||||||   |          | ||| |  |      | |  || |  |||  || |    |||     ||  ||| || |     |||  |    ||
GGACAACCTTGGAGGAGAT---AAGCTTGTCACTGTTGAAGATATTGTCCGTCAGCACTGGGCCACATATGGTCGCCATTACTACACACGCTATGACTATGAGgtacttccttttttttgacatgccccttgcatatatgtaccacctgtttaagatatcattctaaatgcacaagttttt----ttttttgtgaag

upper sequence: AT1G70730.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA08G04890.1 (Glycine max), 5'ss of exon 14
-AACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATTGTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGgta--aaactgacaaatgtcattattggttgtagacaatatgtag-aataaccaattacctttgaccaatttctaaatatttgctccatag
 ||   |  |   |||  |||  || || || ||||||||||| || |||||||| |||||||| ||||| || || ||||| |||||||| |||||||| |||  | ||   || || |  |  |   ||||  | ||| |||    | || || |||    |||||    || |  | ||| |   | ||
TAAAGATAAACTTGAAGACAAG-CTTGTCACTGTTGAAGACATAGTTCGCCAGCATTGGGCTACTTATGGGCGCCATTATTATACTCGATATGACTATGAAgtatgatacaatcacattttctcctactttgtt-ataatctgttttgagaatcagttag---tgacc----tcaattttttttccttaaag

upper sequence: AT1G70730.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA05G34790.1 (Glycine max), 5'ss of exon 14
-AACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATTGTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGgtaaaactgacaaatgtcattattggttgtagacaatatgtagaataaccaattacctttgaccaatttctaaatatttgctccatag--
 ||   |  |   |||  |||  || || || ||||||||||| || |||||||| |||||||| ||||| || || ||||| |||||||| |||||||| |||  |   ||||  |   ||  |  |  |     |||  | |  |    ||| |  |   |   |  || || | |||  ||| ||   
TAAAGATAAACTTGAAGACAAG-CTTGTCACTGTTGAAGACATAGTTCGCCAGCATTGGGCTACTTATGGGCGCCATTATTATACTCGATATGACTATGAAgtatgat--acaatcgcattttctcctactttgttataattggttttgaaaatcagtt---agtgacctc-aatttttttttccttaaag

upper sequence: AT1G70730.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv01s0011g05370.t01 (Vitis vinifera), 5'ss of exon 15
---AACCCTTGATGGGAATGCAAAACTGGTGACGGTTGAAGACATTGTCCGCCAGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGgtaaaactgacaaatgtcattattggttgtagacaatatgtagaataaccaattacctttgaccaatttctaaatatttgctccatag
   || ||||| |||    ||||| || || || |||||||| || || ||| | || |||||||| |||||||| |||||||| |||||||| ||||||||||||  |   || |   | ||| || ||| ||| ||| |   |||||     | || |||| | |   ||| || ||||  ||  |   
GGAAAACCTTGGTGGA---GCAAAGCTTGTTACTGTTGAAGAAATAGTTCGCAATCATTGGGCTACCTATGGCCGCCACTATTATACTCGATATGACTATGAGgtatgatatacta-cctaattttttgttctag-caaaa---agaatcttggagtatcttttaactggttcaaattatt--cttgaag-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116415466|gb|EG458058.1|EG458058
EST:     AGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAG                         AACGTAGACGCAACTGCAGCTAAAGAACTCATGGGACTTTTGGTTAAGTTG
genomic: AGCACTGGGCTACATATGGCCGTCACTATTACACTCGATACGACTATGAGgtaaaactga ... tgctccatagAACGTAGACGCAACTGCAGCTAAAGAACTCATGGGACTTTTGGTTAAGTTG