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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacag

Basic information

species Arabidopsis thaliana
transcript AT1G63640.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgta--aattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttg--caaacacag--------------------------------------------------------
|||||  || | || |||  | ||||||||  |||||||||| |  ||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||||||  || |   | |   |||||  |  |       | |    ||    |||   | ||| | |  | |  | |  ||    | ||                                                           
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgatcttttttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os06g36080.1 (Oryza sativa), 5'ss of exon 12
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacag--------------------
 |||   || | || |||| ||||| ||||  ||||||||||||||||||||||||| ||||| |||||||| ||||| || || ||||| || |||||||||   | |   |   ||     ||  ||| |  ||||    ||  | | ||||  |  | ||| | |  || ||     ||                       
ATTCAAGGAAATTCAACCACTAATTAGATCAGTTCTTGATGGCTATAATGTTTGTATTTTTGCGTATGGTCAAACTGGATCAGGGAAAACATACACAATGgtatgatgctctcagcataagaatattgatctaatttatgtcat--tgagaagtactattgacattattaatgttcttgccatgccatttttacaaatatcttag

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G323622_T01 (Zea mays), 5'ss of exon 5
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaa-attaca-agcttgattttg----ttaa--cgata-tgctttaaccaatgattataagtttt-tctaacagtttctattttgcaaacacag
 ||||  ||||  |  ||  | ||  ||||  |||||||||| | |||||| || || |||||||||||||| |||||||| ||||| ||||| |||||||||| |   || ||||  |  | |    || |   |||| |  |     | ||  |  ||| |  |  || ||| | | | |||| | |      
ATTCTCTGATATCCAGCCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGTTCAGGAAAGACTTACACAATGgtaagacggcagagctcaaaatagaaagttgaattgataatagtcgtggcgatattagtaattggtgcctgacattgttttttttcctag-----

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G062034_T01 (Zea mays), 5'ss of exon 5
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaa------attacaagcttgattttgttaacgatatgctttaac-caatgattat--aagtttttctaacagtttctattttgcaaacacag-----
||||   |||| ||| ||| ||||| ||||  ||||||||||||| |||||||| || ||||| |||||||| ||||| || ||||||||  |||||||||||       || | || |   || || ||    ||||| ||  |  |  | |  ||  | | | |  | ||| |  ||  |||  |   |  |     
TTTCAACGATATTCGGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTTTGCATTTTTGCATATGGTCAAACTGGATCAGGAAAAACACATACAATGgtatgaagctatcagaaccgaaatatttttttaaatatgtttagattcctttacgatggaggatatatttacaataacttgtttcaatgaattgctcag

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G124883_T01 (Zea mays), 5'ss of exon 5
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgta-aattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttct----attttgcaaacacag
 ||||  ||||  | |||  | ||  ||||  |||||||||| | |||||| || || |||||||||||||| ||||| || ||||| ||||| |||||||||  |   || |  |     |   || | |    || |   ||   ||   | | || ||||| ||| ||    ||| |     |  ||
ATTCTCTGATATCCAACCTCTGATCAGATCAGTTCTTGATGGGTTTAATGTGTGCATTTTTGCCTATGGTCAAACTGGATCCGGAAAGACTTACACAATGgtacgagggcagggcttgaaataacaaagttgaaattgatataagccttggga-tattactaactgttgcttgacattgttttttcttag

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattttgttaacgatatgctttaac--caatgattataagtttttctaacagtttctattttgcaaacacag------------
||| |  || |  | |||| | || |||||  |||| ||||| |  || |||||||| ||||| ||||| |||||||||||||| |||||||| || ||||||   || ||  |  ||  |  |||  |  ||   | ||  ||||  | |||  |  |  | |   | ||| |||||     |               
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgta--ctataaaataaatcataataaaaaattgtcatcactacaatagtaatat-tactgattatgatatctgttttgttgttattatttaatctttag

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattt-tgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacag
 |||   || |||| |||||| ||||||||  |||||||||| || ||||||||||||||||| |||||||| ||||| || ||||| || ||||| ||||||      |     | ||  || |    || |    || | |         | |||   || ||  | || || | | |      
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagc-----ctaatttacttagcaactgcttttctactag-----

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA05G37800.1 (Glycine max), 5'ss of exon 14
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacag
 |||   || |||| |||||| ||||||||  |||||||||| || ||||||||||||||||| |||||||| || || || ||||| || ||||| ||||||      |   | |  |||  |     | |   ||    |     | ||| |||   || || || || || | | |      
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACCGGCTCGGGAAAGACATATACGATGgtatgcattatattcg--tttaatgcttttttatgttgcgtatcttgtctaa-tttacttagcaattgcttttctactag-----

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgatttt-gttaacgatatgctttaacca-atgattataagtttttctaacagtttctattttgcaaacacag
 || ||||| |||| |||||||||||||||  | |||||||| || ||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||  |  | |  ||  ||||  |  |  | ||   ||||  | || | |||  ||  |||  || ||| ||  ||||      |||
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttcct--tttgtttctccag

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacag
|||  | ||| | |  || || ||||||||  | |||||||| |  || || ||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||  |   ||||   ||  | |     | ||  |||||   |  | ||                                   
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttaggatt----tgtgtattaacgtctattgatgcag-------------------------------

upper sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacag
|||  | ||| | |  || || ||||||||  | |||||||| |  || || ||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||  |   ||||   ||  | |     | ||  |||||   |  | ||                                   
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtgagctccgttaagatt----tgtgtattaacgtctattgatgcag-------------------------------