1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
GACAAATTAATGCCACAAGATAAAGATAAAGATAAAGAAAAAGAGACTCCGGAGGTGTCTGGTCTGAAGACTGCTGGACCTGAGGGAGAGATAACTGCAGgtccttattcttacatatttctacagtggctgtctaacaaaattttgtttactagcgatccattttccttgcacgacattcttttactgctgttaaggtt...
species | Arabidopsis thaliana |
transcript | AT1G59610.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GGAGGTGTCTGGTCTGAAGACTGCTGGACCTGAGGGAGAGATAACTGCAG GGTACTTAATGAAGAAAAGTGCAAAGACAAATGGGTGGAGTAGGCGATGGEST: gi|124887224|gb|EH966126.1|EH966126
genomic: GGAGGTGTCTGGTCTGAAGACTGCTGGACCTGAGGGAGAGATAACTGCAGgtccttattc ... tgttgtgcagGGTACTTAATGAAGAAAAGTGCAAAGACAAATGGGTGGAGTAGGCGATGG
EST: TGCTGGACCTGAGGGAGAGATAACTGCAG GGTACTTAATGAAGAAAAGTGCAAAGACAAATGGGTGGAGTAGGCGATGGTEST: gi|125318670|gb|EL332755.1|EL332755
genomic: TGCTGGACCTGAGGGAGAGATAACTGCAGgtccttattc ... tgttgtgcagGGTACTTAATGAAGAAAAGTGCAAAGACAAATGGGTGGAGTAGGCGATGGT
EST: GGAGGTGTCTGGTCTGAAGACTGCTGGACCTGAGGGAGAGATAACTGCAG GGTACTTAATGAAGAAAAGTGCAAAGACAAAEST: gi|124769356|gb|EH859486.1|EH859486
genomic: GGAGGTGTCTGGTCTGAAGACTGCTGGACCTGAGGGAGAGATAACTGCAGgtccttattc ... tgttgtgcagGGTACTTAATGAAGAAAAGTGCAAAGACAAA
EST: GGAGGTGTCTGGTCTGAAGACTGCTGGACCTGAGGGAGAGATAACTGCAG GGTACTTAATGAAGAAAAGTGCAAAGACAAATGGGTGGAGTAGGCGATEST: gi|125204369|gb|EL219323.1|EL219323
genomic: GGAGGTGTCTGGTCTGAAGACTGCTGGACCTGAGGGAGAGATAACTGCAGgtccttattc ... tgttgtgcagGGTACTTAATGAAGAAAAGTGCAAAGACAAATGGGTGGAGTAGGCGAT
EST: GGAGGTGTCTGGTCTGAAGACTGCTGGACCTGAGGGAGAGATAACTGCAG GGTACTTAATGAAGAAAAGTGCAAAGACAAATGGGTGGAGTAGGCGATGGT
genomic: GGAGGTGTCTGGTCTGAAGACTGCTGGACCTGAGGGAGAGATAACTGCAGgtccttattc ... tgttgtgcagGGTACTTAATGAAGAAAAGTGCAAAGACAAATGGGTGGAGTAGGCGATGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACAAATTAATGCCACAAGATAAAGATAAAGATAAAGAAAAAGAGACTCCGGAGGTGTCTGGTCTGAAGACTGCTGGACCTGAGGGAGAGATAACTGCAGgtccttattcttacatatttctacagtggctgtctaacaaaattttgtttactagcgatccattttccttgcacgacattcttttactgctgttaaggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttccttgc