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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATATGTATATTCCTCTAGGTGGATCACGAAGAAAATTTCTGAATGTGTGGGTTGTATTTACATTTGTTGCCATGTGGCATGATTTGGAATGgtaatcccttgccttcctatgattcctttgtgttgtatgaatcattcgatgcaactttctcatatggttgactgctgtgtttgcaaccag

Basic information

species Arabidopsis thaliana
transcript AT1G57600.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA10G41940.2 (Glycine max), 5'ss of exon 14
GTATATGTATATTCCTCTAGGTGGATCACGAAGAAAATTTCTGAATGTGTGGGTTGTATTTACATTTGTTGCCATGTGGCATGATTTGGAATGgtaa---tcccttgccttcctatgattcctttgtgttgtatgaatcattcgatgcaactttc--------tcatatggttgactgctgtgtttgcaaccag
|||||| || |||||||| || |||||    | |||  | || |||||||||||||| || ||||||||||| || ||||||||||| || |||||    ||||||   |  | | | |   | | |  |   || |  | | |  |    |||         |  |||| |||| |  | |  | |     ||
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgtatgtttccctttattgtccaagttcaatctattctacctgtaaaagttgcagagttttttatcagatattttatgcttgattattcttatggaccttag

upper sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 15
GTATATGTATATTCCTCTAGGTGGATCACGAAGAAAATTTCTGAATGTGTGGGTTGTATTTACATTTGTTGCCATGTGGCATGATTTGGAATGgtaa---tcccttgccttcctatgattcctttgtgttgtatgaatcattcgatgcaactttc--------tcatatggttgactgctgtgtttgcaaccag
|||||| || |||||||| || |||||    | |||  | || |||||||||||||| || ||||||||||| || ||||||||||| || |||||    ||||||   |  | |   |   | | |  |    | |  | | |  |    |||         |  |||| |||| || | |  | |     ||
GTATATATACATTCCTCTTGGGGGATCTAAGAAAAAGCTACTAAATGTGTGGGTTGTTTTCACATTTGTTGCAATCTGGCATGATTTAGAGTGgtatgtttccctttattgtccaaattcaatctattctaccggtaaaagttgcagagttttttatcagatattttatgcttgattgttcttatggaccttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084239|gb|DR379998.1|DR379998
EST:     TTGTATTTACATTTGTTGCCATGTGGCATGATTTGGAATG                         GAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCTTCATGCCAGAAAT
genomic: TTGTATTTACATTTGTTGCCATGTGGCATGATTTGGAATGgtaatccctt ... ttgcaaccagGAAGCTTCTTTCATGGGCATGGTTAACATGTTTATTCTTCATGCCAGAAAT