1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCAGCTTCGGTTGCAAAGACTTTCTTGATGTCGGACTGCGTTGTTGTTGAGATCAAGGAACCTGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCAGgtttgttcagaatttcaaatacttgagtctttggtaaagatcccccgcattcaatattcatgtttcattgctgaatcttgttggcctctcttatttcag
species | Arabidopsis thaliana |
transcript | AT1G55490.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: TCAAGGAACCTTGAACCAGTTTCCCGTCGGCAACCCAATGGACAACTCAG GATATGGATACTAAGAGGAGATAGGCTAATATTGAAACGGAEST: gi|86087081|gb|DR382840.1|DR382840
genomic: TCAAGGAACC-TGAACCAG-TTCCCGTCGGCAACCCAATGGACAACTCAGgtttgttcag ... cttatttcagGATATGGATACTAAGAGGAGATAGGCTAATATTGAAACGGA
EST: GATCAAGGAACCTGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCAG GATATGGATACTAAGAGGAGATAGGCTAATATTGAAACGGATTACTTTAGCEST: gi|125021199|gb|EL093468.1|EL093468
genomic: GATCAAGGAACCTGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCAGgtttgttcag ... cttatttcagGATATGGATACTAAGAGGAGATAGGCTAATATTGAAACGGATTACTTTAGC
EST: ATCAAGGAACCTGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCAAG GATATGGATACTAAGAGGAGATAGGCEST: gi|125039269|gb|EL111538.1|EL111538
genomic: ATCAAGGAACCTGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCA-Ggtttgttcag ... cttatttcagGATATGGATACTAAGAGGAGATAGGC
EST: GATCAAGGAACCCGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCAG GATATGGATACTAAGAGGAGATAGGCTAATATTGAAACGGATTACTTTAGC
genomic: GATCAAGGAACCTGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCAGgtttgttcag ... cttatttcagGATATGGATACTAAGAGGAGATAGGCTAATATTGAAACGGATTACTTTAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCTTCGGTTGCAAAGACTTTCTTGATGTCGGACTGCGTTGTTGTTGAGATCAAGGAACCTGAACCAGTTCCCGTCGGCAACCCAATGGACAACTCAGgtttgttcagaatttcaaatacttgagtctttggtaaagatcccccgcattcaatattcatgtttcattgctgaatcttgttggcctctcttatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA