Sequence
atgc intronic sequence ATGC exonic sequenceCTGTGCGGAACTTATATTTGCTCCAATCGATGCTTCGTTTGCGGATGATGCACCTCTGCTTCCTTCTGGTTTTCGTATTATCCCTCTTGATTCCGCAAAGgtaaataaaagttatgttttctgtccaagtcttctattattcagattcttaagcttttcttgaaccaaaaaagcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G52150.3 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G52150.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 15
CTGTGCGGAACTTATATTTGCTCCAATCGATGCTTCGTTTGCGGATGATGCACCTCTGCTTCCTTCTGGTTTTCGTATTATCCCTCTTGATTCCGCAAAGgt--aaataaaagttat--gttttctgtccaagtc-ttctattattc-------agattcttaagcttttcttgaaccaaaaaagcag
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CTGTGCTGAACTTATATCTGCTCCAATTGATGCTTCGTTTGCTGATGATGCCCCCCTTCTACCTTCTGGATTTCGCATCATTCCTCTTGAATCTGGAAAGgtttgcgtcatactcatacgttgttgaaccagcttattttattttttccgacaagaatcttttaattattactatgcaattttcacag
upper sequence: AT1G52150.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 14
CTGTGCGGAACTTATATTTGCTCCAATCGATGCTTCGTTTGCGGATGATGCACCTCTGCTTCCTTCTGGTTTTCGTATTATCCCTCTTGATTCCGCAAAGgtaaataa--aagttatgttttctgtccaagtcttctattatt------cagattcttaagcttttcttgaaccaaaaaagcag------------
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CTGTGCTGAACTCATATTTGCTCCCATTGACGCTTCTTTTGCTGATGATGCACCTCTTTTGCCTTCTGGTTTTCGCATCATCCCTCTTGATTCTGGGAAGgttagcatttaaatcacattaactgttgtattcctttagtttctcttgcctttttctttgacttttctttaatcaatgaattgtccaatgatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164078622|gb|ES116992.1|ES116992EST: CACCTCTGCTTCCTTCTGGTTTTCGTATTATCCCTCTTGATTCCGCAAAG GAAGTATCTAGCCCAAACCGAACCTTGGATCTTGC
genomic: CACCTCTGCTTCCTTCTGGTTTTCGTATTATCCCTCTTGATTCCGCAAAGgtaaataaaa ... aaaaaagcagGAAGTATCTAGCCCAAACCGAACCTTGGATCTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGTGCGGAACTTATATTTGCTCCAATCGATGCTTCGTTTGCGGATGATGCACCTCTGCTTCCTTCTGGTTTTCGTATTATCCCTCTTGATTCCGCAAAGgtaaataaaagttatgttttctgtccaagtcttctattattcagattcttaagcttttcttgaaccaaaaaagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG