1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
GCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGgtaaactcgataactttaatccacttcttttataactcgcatacagtagttctcgtgatttatttcttctttctctgctggtttatctgatattcacag
species | Arabidopsis thaliana |
transcript | AT1G51710.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: CAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAG GTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCAEST: gi|125314430|gb|EL328515.1|EL328515
genomic: CAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGgtaaactcga ... atattcacagGTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCA
EST: CAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAG GTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCAEST: gi|86084161|gb|DR379920.1|DR379920
genomic: CAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGgtaaactcga ... atattcacagGTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCA
EST: CAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAG GTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCA
genomic: CAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGgtaaactcga ... atattcacagGTGATTGGCATATGGCGTACATCACAATGTACAAAGCCCGCTTCGTCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAATGGATTCAATATGATGATGACAACCCGAGCATGCAACGCGAAGAAGACATCACAAAGCTATCTGGAGGAGgtaaactcgataactttaatccacttcttttataactcgcatacagtagttctcgtgatttatttcttctttctctgctggtttatctgatattcacag
- - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG