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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTTAGGGGCTATCTTCAACTGTCTAGATCCAGTAATGACAGTTGTTGCTGGTCTTAGTGTCAGAGACCCATTCCTTATGCCATTTGACAAAAAAGATgtaagttattagtgaatgattcatgtgattcattcatattgcttttggcgaaatgctcctctcagttgactggaggtcagcagaaagccaagaagtgcctctagttatttacttgattcctattattgcag

Basic information

species Arabidopsis thaliana
transcript AT1G48650.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48650.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA08G05480.1 (Glycine max), 5'ss of exon 14
TATTTTAGGGGCTATCTTCAACTGTCTAGATCCAGTAATGACAGTTGTTGCTGGTCTTAGTGTCAGAGACCCATTCCTTATGCCATTTGACAAAAAAGATgtaagttattagtgaatgattcatgtgattcattcatattgcttttggcgaaatgctcctctcagttgactggaggtcagcagaaagccaagaagtgcctctagttatttacttgattcctattattgcag
 ||||| || || |||||||| ||| | |||||  |||||||||||||||||||||||||||| ||||| |||||  | ||||| | |||||| || |||||||||| ||  |  |||||   ||        | ||||| | |    |   |  ||  |||  |||  ||| |  |  |  |    |     ||      | ||   ||                     
CATTTTGGGAGCAATCTTCAAGTGTTTGGATCCCATAATGACAGTTGTTGCTGGTCTTAGTGTAAGAGATCCATTTGTGATGCCGTCTGACAAGAAGGATgtaagtttttgtt--atgatcactgc-------tgatatttcctcctccctga--cttttctttgtttgctgaacttgggatgtcttcttgatagaaatggtggtggattt--------------------

upper sequence: AT1G48650.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA05G34180.1 (Glycine max), 5'ss of exon 14
TATTTTAGGGGCTATCTTCAACTGTCTAGATCCAGTAATGACAGTTGTTGCTGGTCTTAGTGTCAGAGACCCATTCCTTATGCCATTTGACAAAAAAGATgtaagttattagtgaatgattcatgtgattcattcatattgcttttggcgaaatgctcctctcagttgactggaggtcagcagaaagccaagaagtgcctctagttatttacttgattcctattattgcag
 ||||| || ||||||||||| ||| | |||||  |||||||  ||||||||||||||||||| ||||| |||||  | ||||| | |||||| || |||||||||| ||  |  ||||    ||        | ||||| | |    |   |  ||  |||  |||  ||| |  |          |     ||      | || | ||                     
CATTTTGGGAGCTATCTTCAAGTGTTTGGATCCCATAATGACTATTGTTGCTGGTCTTAGTGTAAGAGATCCATTTGTAATGCCGTCTGACAAGAAGGATgtaagtttttgtt--atgaccactgc-------tgatatttcctcctccctga--cttttctttgtttgctgaacttggatgttcctcttgatagaaatggtggtgaattt--------------------

upper sequence: AT1G48650.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv17s0000g03030.t01 (Vitis vinifera), 5'ss of exon 13
TATTTTAGGGGCTATCTTCAACTGTCTAGATCCAGTAATGACAGTTGTTGCTGGTCTTAGTGTCAGAGACCCATTCCTTATGCCATTTGACAAAAAAGATgtaagttattagtgaatgattcatgtgattcattc-atattgcttttggcgaaatgctcctctcagttgactggaggtcagcagaaagccaagaagtgcctctagttatttacttgattcctattattgcag
 || || ||  || | |||||||||||  ||||| ||||||| |||||||||||||||||||| ||||| || ||| | |||||||||||||| || ||||||||||||   |  ||  | |  ||     || |  |  ||  ||||||  |||     | | |  | | |   | |         | |      |   ||| ||||||                      
CATATTTGGTTCTCTTTTCAACTGTCTGAATCCAATAATGACTGTTGTTGCTGGTCTTAGTGTTAGAGATCCGTTCTTGATGCCATTTGACAAGAAGGATgtaagttatctttccatt-tccgagttgcagatgctgttctgtctttggcttaatagatgttttaagttattattgat---------gtcttttcttttttcttgttatt----------------------