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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGgttagtctctttcgagatcttttgcctatttgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag

Basic information

species Arabidopsis thaliana
transcript AT1G25350.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os01g09000.1 (Oryza sativa), 5'ss of exon 13
TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGg---ttagtctctttcgagatcttttgc-ctatttgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag
||| | ||||||||  | |||||||| |||||||| |||||||| || ||||| ||||| |||||||  || |||||||||||||| || || |||||||   || | || ||   |  |   |||   || |||||  ||  | | || |    | || ||  |   ||    |                                                                                                           
TTCACTCCTCATCCACATGCTGGTGATAAGTGGTGCATCTATCCAAGCTATGACTATGCTCACTGCATGGTGGATTCTCTTGAGAACATTACACATTCGgtactttgccttttctcaattagattgagttagttgcattatggcatgatgtggactaag-tgtggttattcattag----------------------------------------------------------------------------------------------------------

upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G048012_T01 (Zea mays), 5'ss of exon 12
TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGgttagtctctttcgagatcttttgc--ctatttgcagcattacttaata-taac----tttagctgctgcattttgccactatttactt-tcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag
||| | ||||||||  | |||||||| || ||||||||||||||||| ||||| ||||| || ||||  || ||||||||||| || || ||||||||||| | | ||||      |||||| |   || ||      |   |||| | ||||    |  ||   ||| ||| ||  | |  ||| || | ||                                                                                             
TTCACCCCTCATCCACATGCTGGTGATAATTGGTGTATCTATCCGAGCTATGACTATGCTCATTGCATGGTGGATTCTCTTGAAAACATCACGCATTCGgtaattttcttattttttcttttccaaatagttttgagttggtttaacaataacaggatacaggaactg-attctgttatttcttatttgttag---------------------------------------------------------------------------------------------

upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G032049_T01 (Zea mays), 5'ss of exon 13
TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGgttagtctctttcgagatcttttgcctatttgcagcattacttaatataactttagctgctgc--attttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag
||| | || |||||  | ||||| |||||||||||| |||||||||| ||||| || || || ||||  || ||||||||||| || || || |||||||| | |     |     |||||| || | | |     ||| ||  | ||||  || |     |  | | ||  |    ||| || |                                                                                               
TTCACCCCCCATCCACATGCTGGCGACAAGTGGTGTGTCTATCCGAGCTATGACTACGCTCATTGCATGGTGGATTCTCTTGAAAACATCACACATTCGgtaatttcacctttttttctttt-ccaaatagt--ttttagttggtttaacaataacaataactaagtctgttatgtcttatttgctag--------------------------------------------------------------------------------------------

upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA20G25120.2 (Glycine max), 5'ss of exon 14
TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGgttagtc-tctttcgagatcttttgcctatttgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag
||  | || || ||| | ||||| ||||| |||||||||||||| |||||||||||||| ||||||| ||| |||||||| |||||||| || ||||| || |||  ||||||      |||   | |  ||  |    | ||    |     || |    |   |||   | ||   | || | ||  | ||  |||                                                                                 
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACACTGCATTGTGGATTCTCTAGAGAATATCACACATTCAgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaacctaagttcttttttattacccatttgctgtt-tgaaccttcaa-------------------------------------------------------------------------------

upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GLYMA10G41920.2 (Glycine max), 5'ss of exon 14
TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGgttagtc-----tctttcgagatcttttgcctatt--tgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag
||  | || || ||| | ||||| ||||| |||||||||||||| |||||||||||||| || |||| ||| |||||||| |||||||| || ||||| || |||      ||  || |  || |     | ||  | ||   ||  |     |||| |||| |  |   | || ||   ||||  ||| |    | || |                                                                                    
TTTACCCCACACCCTCATGCTGGAGACAAATGGTGTATCTATCCAAGTTATGATTATGCACATTGCATTGTGGATTCTCTAGAGAATATCACACATTCTgtaagttgtctttcactcaatttcctccaggtgttgatacaattttcttgctggtaaccttagttcttttttattacc--cattttatttgaaccttcaaca------------------------------------------------------------------------------------

upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv01s0011g03740.t01 (Vitis vinifera), 5'ss of exon 14
TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGgttagtctctttcgagatcttttgcctatttgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag
||  | ||||||||  |  | || |||||||||||||| ||||| |||||||||||| | || |||| ||| ||||||||||| ||||| || ||||||||  ||  ||| |       ||||   | || |  | |   ||| ||  | |||   |  || || || | |    || ||     |   |    || || || |||||| | | |                                                               
TTTACCCCTCATCCACATTCAGGGGACAAGTGGTGTATTTATCCAAGTTATGATTATTCTCATTGCATTGTGGATTCTCTTGAAAATATTACACATTCGgtatgttccttgc-------tttgataagtttc--cttctgttactaagatttt---tcttgtatatttcaagatgtttctcatgtttgca----tttccattgctgtatagtatg---------------------------------------------------------------

upper sequence: AT1G25350.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv15s0021g01230.t01 (Vitis vinifera), 5'ss of exon 14
TTCGCACCTCATCCTAAGGCTGGTGACAAGTGGTGTATCTATCCGAGTTATGATTATGCCCACTGCACTGTTGATTCTCTTGAGAATATAACGCATTCGgttagtctctttcgagatcttttgcctatttgcagcattacttaatataactttagctgctgcattttgccactatttactttcagtaataaaaattcccttttctgtatcgaaagcatctgctgttttaaaaactatctctgtgattctgaccatttcttttatgtgcataattgtag
||  | ||||| ||  | ||||| |||||||||||| | ||||| ||||| |||||||| || |||| ||| |||||||||||||| || || ||||| ||  |   | ||   |  |||||  |    | ||   ||| |   | ||  |||   |  | |||||||| | ||  || |||       || | |||  || |    ||    |                                                                
TTTACTCCTCACCCACATGCTGGAGACAAGTGGTGTGTTTATCCAAGTTACGATTATGCTCATTGCATTGTAGATTCTCTTGAGAACATCACTCATTCAgtatgctccctt---gcccttttatcc---tccatttttaatgtgtgta--ttttcttattacattttgc-aataactatttt-------aagagttcgtttcttgaaattttgat---------------------------------------------------------------