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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAAATCGAGAGTGATGGTGGTCAAGTGGAGCCACCAGGGATAAACATGATATATCTTCCATATGCTAATGATATTAGAGATATCGACGAGgcaagaaagaattgcttttgaaaagctacttggttccaacgttattaatgtttgttaaattttgactagttggtggaattttggcag

Basic information

species Arabidopsis thaliana
transcript AT1G16970.1
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G16970.1 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: Vv05s0062g01170.t01 (Vitis vinifera), 5'ss of exon 15
GATGAAATCGAGAGTGATGGTGGTCAAGTGGAGCCACCAGGGATAAACATGATATATCTTCCATATGCTAATGATATTAGAGATATCGACGAGgcaagaaagaattgcttttgaaaagctacttggttccaacgttattaatgtttgttaaattttgactagttggtggaattttggcag
||||| |||     || ||||| ||| || ||||||||||| ||  | |||||||||||||||||| || ||||||| ||| | ||||| ||||||||| ||||   ||||      | ||        |  |  ||  | ||  | ||| |  |     | |   |   |||||| |||
GATGAGATCATTGCTGGTGGTGTTCAGGTTGAGCCACCAGGCATGCATATGATATATCTTCCATATTCTGATGATATCAGACACATCGAAGAGgcaagagagaa---ctttgagttggttaaagatgctcttcagtaagactgact-ttataactaaggaattcaattacattttg-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125291277|gb|EL305362.1|EL305362
EST:     AAACATGATATATCTTCCATATGCTAATGATATTAGAGAATATCGACGAG                         TTGCATTCAAAACCAG
genomic: AAACATGATATATCTTCCATATGCTAATGATATTAGAGA-TATCGACGAGgcaagaaaga ... attttggcagTTGCATTCAAAACCAG
EST: gi|86088447|gb|DR384206.1|DR384206
EST:     TAAACATGATATATCTTCCATATGATAATGATATTAGAGATATCGACGAG                         TTGCATTCAAAACCAGGTGTAGCTGCTCCTCGCGCATCAGATGATCAGCTT
genomic: TAAACATGATATATCTTCCATATGCTAATGATATTAGAGATATCGACGAGgcaagaaaga ... attttggcagTTGCATTCAAAACCAGGTGTAGCTGCTCCTCGCGCATCAGATGATCAGCTT