Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATGgtaaatccgataattttttcttgccaatttctccgtcttactggatactggttttgaaaatgtaaccttgtgaaatctttttactcaaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G13560.2
intron # 14
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: LOC_Os02g02750.1 (Oryza sativa), 5'ss of exon 14
GGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATGgtaaat--ccgataattttttcttgccaattt----ctccgtcttactggatactggttttgaaaatgtaaccttgtgaaatctttttactcaaaatgcag-------------
|| ||||||||||| |||||||| ||||||||||| ||||| || || |||   |||||||||||   |  |  || |  |||  |      |||     |||  |    |  |||     | |   |   ||  | | |    | || | | | || ||   |             
GGCAGAATGATTCTGGCTCACTTATGTGATGAGCCCAAAGGTCTGAAGACAGGGATGTGCATGgttgttgcctaatcacctttgttctttggttttgttttccaccaccttttataagtaatatatgatgatacgcatatattttgttatgattaaacattgtgcctccctttgcag

upper sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G466281_T01 (Zea mays), 5'ss of exon 14
GGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATGgtaaat-ccgataattttttcttgccaatttctccgtcttactggatactggttttgaaaatgtaaccttgtgaaatctttttactcaaaatgcag
|||||||||||||| ||||||||||||||||| || || ||  | ||||||   ||||||||||||  | |    ||       |      ||  ||  | ||||    | ||  |||  |  |  | ||  |   ||||| | ||  ||    | |||
GGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaatcattctttgttcttttttacaccgtcctcattt--atgaccttac--taaaaaatcgtatttatccttctacag

upper sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G466281_T03 (Zea mays), 5'ss of exon 1
-------------------------------------GGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATGgtaaat-ccgataattttttcttgccaatttctccgtcttactggatactggttttgaaaatgtaaccttgtgaaatctttttactcaaaatgcag
                                     |||||||||||||| ||||||||||||||||| || || ||  | ||||||   ||||||||||||  | |    ||       |      ||  ||  | ||||    | ||  |||  |  |  | ||  |   ||||| | ||  ||    | |||
TGAACATTACTTTACATCTGCTTATATTGCTCCACAGGGAAGAATGATTCTGGCTCACTTGTGTGATGAACCCAAGGGTTTGAAAACAGGGATGTGCATGgtacttgcttggaaagcccaatcattctttgttcttttttacaccgtcctcattt--atgaccttac--taaaaaatcgtatttatccttctacag

upper sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G701058_T02 (Zea mays), 5'ss of exon 1
-------------------------------------GGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATGgta--aatccgataattttttcttgccaatttctccgt-cttactggatactggttttgaaaatgtaaccttgtgaaatctttttactcaaaatgcag
                                     ||||||||||| |||||||| ||||||||||| || ||||| |||||| |    |||| |||||||  | |  ||    |  |   | |  || | |   | |  | || |  ||  | || ||    | ||      || |||| ||  |||        
ACTACTGCTTATAATGTAAATAATCATCTATGAACAGGGAAGAATGATACTTGCTCATTTGTGTGATGAACCCAAAGGTCTAAAATCTGGGATGTTCATGgtatgactttgaagtgtcctgtattctcatctttagatgccaagtgtaggctactattaaagcgctgacaaaaaaaactcttatt--tcag-------

upper sequence: AT1G13560.2 (Arabidopsis thaliana), 5'ss of exon 14
lower sequence: GRMZM2G701058_T01 (Zea mays), 5'ss of exon 12
GGAAGAATGATTCTTGCTCACTTGTGTGATGAGCCTAAAGGACTAAAAACAAACATGTGCATGgta--aatccgataattttttcttgccaatttctccgt-cttactggatactggttttgaaaatgtaaccttgtgaaatctttttactcaaaatgcag
||||||||||| |||||||| ||||||||||| || ||||| |||||| |    |||| |||||||  | |  ||    |  |   | |  || | |   | |  | || |  ||  | || ||    | ||      || |||| ||  |||        
GGAAGAATGATACTTGCTCATTTGTGTGATGAACCCAAAGGTCTAAAATCTGGGATGTTCATGgtatgactttgaagtgtcctgtattctcatctttagatgccaagtgtaggctactattaaagcgctgacaaaaaaaactcttatt--tcag-------